Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 5.4e-306 1053.5 536 100.0
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.2e-276 956.1 535 90.8
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.7e-259 899.0 536 84.5
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 4.6e-257 891.0 531 86.6
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.2e-252 876.3 537 82.7
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.4e-250 869.4 536 81.5
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 7.2e-250 867.1 536 81.3
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 7.9e-249 863.6 536 81.2
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 7.9e-249 863.6 536 81.2
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 8.8e-248 860.1 536 81.5
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 6.3e-246 854.0 536 81.2
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 2.7e-241 838.6 536 79.5
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 5.4e-229 797.7 542 76.2
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 3.1e-221 771.9 536 75.0
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.1e-205 720.3 411 89.3
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 8.9e-192 674.1 540 63.3
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 2.6e-191 672.5 543 62.8
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 5.4e-189 664.8 545 62.6
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 1.6e-188 663.3 545 62.4
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 3.5e-188 662.1 543 61.5
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.3e-187 660.2 545 61.8
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.7e-187 659.8 542 61.3
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 5.1e-187 658.3 550 61.6
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 5.1e-187 658.3 550 61.6
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 5.1e-187 658.3 543 61.7
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 6.2e-185 651.4 543 62.6
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 4.0e-184 648.7 542 61.1
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 2.0e-183 646.4 542 60.1
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.8e-182 642.1 540 61.5
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 3.8e-182 642.1 535 60.7
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 6.4e-182 641.3 540 61.5
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.4e-181 640.2 539 61.6
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 5.4e-181 638.3 540 60.7
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 9.3e-181 637.5 543 62.1
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.2e-180 637.1 550 58.9
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.6e-180 636.7 540 61.3
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 2.1e-180 636.3 541 60.8
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 3.5e-180 635.6 543 59.7
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.0e-179 634.0 550 58.7
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.0e-179 632.5 540 61.1
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 3.3e-178 629.0 551 58.6
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 2.8e-177 625.9 543 60.8
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.6e-177 625.5 551 58.1
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 3.6e-177 625.5 541 58.4
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 6.2e-177 624.8 545 58.0
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.4e-176 623.6 542 60.3
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 3.1e-176 622.5 545 58.2
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 9.0e-176 620.9 544 59.2
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 2.6e-175 619.4 541 58.4
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 3.4e-175 619.0 357 88.5
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 2.2e-174 616.3 544 57.9
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.2e-174 616.3 586 56.1
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 2.2e-174 616.3 540 58.3
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 3.8e-174 615.5 544 58.6
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 4.9e-174 615.1 541 58.0
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 8.4e-174 614.4 541 57.3
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 3.2e-173 612.5 541 58.2
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 7.1e-173 611.3 545 58.3
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.2e-172 610.5 518 60.4
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.6e-172 610.1 544 57.7
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 7.9e-172 607.8 541 57.3
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.3e-171 607.1 544 56.2
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 3.9e-171 605.5 505 59.8
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 5.1e-171 605.1 539 58.4
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 6.7e-171 604.7 549 57.0
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 8.7e-171 604.4 549 56.6
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.9e-170 603.2 539 58.4
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 4.3e-170 602.1 543 57.6
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 5.6e-170 601.7 544 55.9
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 6.2e-169 598.2 587 55.4
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 8.1e-169 597.8 529 58.4
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.8e-168 596.7 540 57.0
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.1e-168 595.9 546 55.9
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 5.3e-168 595.1 542 56.8
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 9.0e-168 594.3 549 56.6
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 9.0e-168 594.3 545 56.3
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 3.4e-167 592.4 527 57.5
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 7.1e-165 584.7 548 55.8
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 9.3e-165 584.3 528 57.2
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 9.3e-165 584.3 546 55.7
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 3.5e-164 582.4 539 56.2
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 3.0e-163 579.3 538 57.4
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 5.1e-163 578.6 546 55.1
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.1e-161 573.2 549 52.8
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.3e-160 568.5 518 57.5
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.0e-160 567.8 586 53.1
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.0e-160 567.8 587 53.7
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.8e-159 565.1 518 57.3
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-158 563.5 587 53.3
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 8.4e-158 561.2 545 54.9
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.4e-157 560.5 530 54.7
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 6.0e-156 555.1 460 66.7
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-154 550.4 519 56.3
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 1.9e-154 550.1 542 53.5
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.6e-153 547.0 515 55.0
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 2.8e-153 546.2 533 54.0
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.0e-150 537.7 532 53.6
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 3.2e-149 532.7 544 51.7
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 2.7e-148 529.6 574 50.7
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.9e-146 523.5 536 50.2
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 3.0e-139 499.6 414 59.9
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.5e-138 497.3 550 48.4
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.7e-137 492.7 550 48.0
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.4e-128 464.2 422 56.2
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 3.1e-128 463.0 417 55.9
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 9.1e-120 434.9 504 51.4
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 3.5e-119 433.0 505 46.3
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 4.5e-119 432.6 504 51.2
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 1.7e-118 430.6 545 45.0
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 9.5e-109 398.3 603 38.1
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 8.8e-107 391.7 493 45.2
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.7e-103 380.2 424 50.7
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 3.5e-103 379.8 322 61.8
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 2.3e-99 367.1 544 42.1
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 7.8e-95 352.1 504 39.5
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 3.1e-91 340.1 520 38.7
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 5.2e-91 339.3 355 49.9
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 9.8e-90 335.1 485 38.8
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 3.2e-88 330.1 349 54.2
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.0e-86 325.1 423 44.9
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.1e-83 315.1 485 38.1
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 6.8e-75 285.8 264 53.4
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 1.3e-73 281.6 347 47.0
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 3.1e-59 233.8 266 48.1
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.4e-56 224.9 210 56.2
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.4e-56 224.9 203 58.1
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.5e-53 214.2 165 59.4
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 4.5e-50 203.4 354 40.7
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.3e-46 191.8 113 84.1
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 9.6e-45 185.7 115 80.9
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-34 151.8 90 87.8
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 6.5e-33 146.4 547 28.5
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.1e-32 145.6 126 59.5
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 7.2e-32 142.9 580 24.0
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 7.9e-31 139.4 112 67.9
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.8e-30 138.3 116 62.1
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 1.1e-29 135.6 205 43.4
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 9.7e-29 132.5 96 69.8
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.9e-26 123.2 108 57.4
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 7.7e-26 122.9 446 28.7
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 2.9e-25 120.9 499 25.9
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 3.6e-23 114.0 125 56.8
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.0e-22 110.9 107 53.3
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 2.0e-21 108.2 91 60.4
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 3.3e-21 107.5 100 55.0
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.5e-18 98.6 88 67.0
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 4.2e-16 90.5 176 32.4
BcaC07g40045 Brassica carinata HOM05D001925 ORTHO05D005701 3.3e-13 80.9 58 75.9
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 3.1e-11 74.3 541 23.3


User provided reference genes

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