Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 7.9e-155 550.4 284 100.0
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 1.2e-142 510.0 292 93.2
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 1.5e-142 509.6 290 90.3
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 2.3e-130 469.2 290 85.2
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 4.4e-129 464.9 291 83.8
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 7.4e-129 464.2 290 84.1
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 1.1e-111 407.1 295 74.9
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 3.2e-108 395.6 277 76.5
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 7.0e-103 377.9 296 70.9
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 1.5e-100 370.2 292 70.5
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 1.8e-98 363.2 292 69.5
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 4.4e-97 358.6 298 70.1
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 4.4e-97 358.6 298 70.1
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 1.8e-95 353.2 292 72.6
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.3e-93 347.1 295 70.8
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.3e-90 336.3 302 67.2
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 2.0e-89 333.2 291 67.4
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 6.4e-88 328.2 301 67.4
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 4.1e-87 325.5 295 67.5
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.6e-86 323.6 292 68.5
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.3e-85 320.5 300 66.0
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 2.5e-84 316.2 248 69.0
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 1.8e-82 310.1 292 65.4
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 1.2e-81 307.4 304 61.8
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.2e-81 307.4 293 63.1
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 1.2e-81 307.4 293 63.1
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 3.4e-81 305.8 298 62.8
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 6.4e-80 301.6 304 63.8
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 3.2e-79 299.3 303 62.0
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 3.2e-79 299.3 293 62.5
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 7.8e-78 294.7 297 62.6
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 7.3e-76 288.1 295 60.7
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 9.5e-76 287.7 303 59.7
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 4.7e-75 285.4 298 59.7
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 6.2e-75 285.0 299 60.2
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 8.1e-75 284.6 287 61.0
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 1.4e-74 283.9 295 59.3
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 1.8e-74 283.5 277 61.4
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 1.8e-74 283.5 281 62.6
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 3.1e-74 282.7 299 58.5
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 4.0e-74 282.3 291 60.1
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 1.2e-73 280.8 304 58.6
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.2e-73 280.8 261 61.7
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 1.5e-73 280.4 301 59.8
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 4.4e-73 278.9 298 59.7
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 7.6e-73 278.1 305 58.7
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.9e-72 276.2 309 57.3
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 2.9e-72 276.2 304 58.2
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 4.9e-72 275.4 289 58.8
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 4.9e-72 275.4 297 59.9
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 8.4e-72 274.6 296 59.5
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.1e-71 274.2 278 62.6
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 6.0e-70 268.5 286 56.6
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 2.3e-69 266.5 321 54.2
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.0e-69 266.2 269 58.4
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 6.6e-69 265.0 299 57.5
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 6.6e-69 265.0 299 57.5
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 8.6e-69 264.6 293 55.6
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 8.6e-69 264.6 291 55.3
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 1.1e-68 264.2 297 54.5
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.1e-68 264.2 304 55.9
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 1.9e-68 263.5 302 57.0
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.9e-68 263.5 295 58.3
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 4.3e-68 262.3 266 58.3
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 4.3e-68 262.3 304 56.2
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 5.6e-68 261.9 286 58.7
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 9.6e-68 261.2 294 55.8
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.2e-67 260.8 308 53.6
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.7e-67 258.8 282 55.0
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 6.2e-67 258.5 259 59.8
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 2.4e-66 256.5 310 56.8
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.5e-65 253.8 290 54.5
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 9.9e-65 251.1 260 55.8
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.1e-63 247.7 261 56.3
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.9e-63 246.9 284 53.5
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 3.2e-63 246.1 285 56.5
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 9.3e-63 244.6 180 79.4
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 9.3e-63 244.6 297 51.5
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.1e-62 243.4 289 54.0
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 3.5e-62 242.7 295 50.8
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 4.6e-62 242.3 302 52.3
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 4.6e-62 242.3 293 52.2
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 7.8e-62 241.5 281 54.1
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 1.0e-61 241.1 274 57.3
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.0e-61 241.1 275 53.5
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 1.0e-61 241.1 250 58.8
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 2.3e-61 240.0 268 55.2
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 6.6e-61 238.4 286 52.4
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 1.5e-60 237.3 398 45.0
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 4.3e-60 235.7 279 54.1
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 1.3e-59 234.2 299 52.5
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 2.1e-59 233.4 264 56.4
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 8.1e-59 231.5 278 55.4
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 1.8e-58 230.3 307 52.1
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 6.9e-58 228.4 262 55.0
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 9.0e-58 228.0 297 50.2
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 1.2e-57 227.6 261 55.9
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 1.5e-57 227.3 307 51.5
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 2.0e-57 226.9 310 49.4
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 2.0e-57 226.9 305 50.8
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 5.8e-57 225.3 304 50.0
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 2.2e-56 223.4 293 51.5
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 4.9e-56 222.2 308 48.7
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 6.4e-56 221.9 296 50.7
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 1.9e-55 220.3 304 50.0
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 1.9e-55 220.3 277 53.4
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 8.7e-53 211.5 290 46.2
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.5e-52 210.7 293 49.5
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 2.5e-52 209.9 236 56.8
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 2.1e-51 206.8 307 49.2
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 4.8e-51 205.7 278 46.0
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 4.0e-50 202.6 271 49.1
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 2.6e-49 199.9 275 46.5
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 5.8e-49 198.7 289 46.7
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 9.9e-49 198.0 234 55.6
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.0e-45 188.0 296 44.6
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 3.0e-45 186.4 262 50.8
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 1.1e-44 184.5 302 45.0
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.5e-44 184.1 265 47.2
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 2.8e-43 179.9 195 59.0
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 4.9e-40 169.1 158 62.7
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 6.5e-40 168.7 289 42.2
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 1.6e-38 164.1 259 45.2
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 1.0e-37 161.4 101 83.2
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 1.0e-37 161.4 171 55.6
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 1.0e-37 161.4 241 45.2
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 1.5e-36 157.5 265 42.3
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 2.5e-36 156.8 318 37.4
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 1.3e-35 154.5 155 63.9
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 2.8e-35 153.3 256 43.0
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 3.7e-35 152.9 232 47.0
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.1e-34 151.4 308 37.3
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.6e-30 137.5 265 39.6
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 2.3e-29 133.7 230 41.7
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 3.0e-29 133.3 280 39.6
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 4.1e-26 122.9 123 59.3
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 1.6e-22 110.9 102 61.8
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 3.6e-22 109.8 70 84.3
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 5.1e-21 105.9 101 60.4
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 3.9e-13 79.7 68 55.9
A02p05200 Brassica napus HOM05D059425 ORTHO05D041380 5.7e-12 75.9 95 50.5
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 2.8e-11 73.6 71 50.7
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 2.4e-10 70.5 60 61.7
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 1.3e-08 64.7 120 39.2
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.7e-08 64.3 112 35.7
BcaB02g09691 Brassica carinata HOM05D000068 ORTHO05D014998 8.5e-08 62.0 42 76.2
BolC5t32385H Brassica oleracea HOM05D005029 ORTHO05D006052 1.1e-07 61.6 36 83.3


User provided reference genes

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