Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 9.6e-46 186.4 91 100.0
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 3.6e-45 184.5 91 97.8
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 2.6e-43 178.3 91 92.3
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 1.3e-42 176.0 91 92.3
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 4.9e-42 174.1 91 92.3
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 7.1e-41 170.2 91 87.9
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 7.1e-41 170.2 91 87.9
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 3.5e-40 167.9 91 86.8
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 3.5e-40 167.9 91 86.8
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 3.5e-40 167.9 91 86.8
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 3.5e-40 167.9 91 86.8
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 3.5e-40 167.9 91 86.8
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 1.9e-38 162.2 88 87.5
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 3.3e-38 161.4 91 84.6
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 3.3e-38 161.4 91 84.6
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 3.3e-38 161.4 91 84.6
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 3.3e-38 161.4 91 84.6
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 9.6e-38 159.8 91 83.5
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.4e-36 156.0 91 81.3
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.4e-36 156.0 91 81.3
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.5e-35 152.5 91 79.1
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.4e-35 151.4 91 76.9
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 5.5e-33 144.1 91 73.6
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.2e-32 142.9 91 73.6
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 1.2e-32 142.9 91 73.6
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 1.2e-32 142.9 91 72.5
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 6.0e-32 140.6 91 70.3
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 7.9e-32 140.2 91 69.2
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.3e-31 139.4 91 69.2
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.3e-31 139.4 91 70.3
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 1.8e-31 139.0 91 70.3
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.8e-31 139.0 91 70.3
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 3.0e-31 138.3 91 70.3
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 3.0e-31 138.3 91 69.2
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 5.1e-31 137.5 87 73.6
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 5.1e-31 137.5 87 73.6
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 6.7e-31 137.1 91 69.2
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 1.1e-30 136.3 91 69.2
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 1.5e-30 136.0 88 71.6
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.9e-30 135.6 91 69.2
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 2.5e-30 135.2 91 67.0
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 2.5e-30 135.2 91 68.1
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 2.5e-30 135.2 88 71.6
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 3.3e-30 134.8 88 69.3
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 4.3e-30 134.4 91 67.0
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 4.3e-30 134.4 91 68.1
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.6e-30 134.0 91 65.9
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.6e-30 134.0 91 67.0
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 5.6e-30 134.0 91 67.0
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 9.6e-30 133.3 91 67.0
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 1.3e-29 132.9 91 67.0
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.6e-29 132.5 88 69.3
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 1.6e-29 132.5 93 68.8
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.6e-29 132.5 91 65.9
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 1.6e-29 132.5 88 69.3
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 68.2
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.1e-29 132.1 91 65.9
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.8e-29 131.7 91 64.8
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 3.7e-29 131.3 88 69.3
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 3.7e-29 131.3 90 67.8
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 4.8e-29 131.0 89 66.3
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 6.2e-29 130.6 90 65.6
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 6.2e-29 130.6 90 65.6
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 8.2e-29 130.2 87 67.8
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 1.1e-28 129.8 88 65.9
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 1.4e-28 129.4 87 66.7
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.8e-28 129.0 91 65.9
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 2.4e-28 128.6 93 66.7
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 2.4e-28 128.6 89 66.3
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 5.3e-28 127.5 88 63.6
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 5.3e-28 127.5 88 64.8
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 67.8
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 1.2e-27 126.3 91 67.0
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 1.2e-27 126.3 91 67.0
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 65.5
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 1.5e-27 125.9 91 67.0
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 3.4e-27 124.8 88 64.8
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 7.6e-27 123.6 87 64.4
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 1.3e-26 122.9 91 64.8
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 2.2e-26 122.1 89 62.9
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.9e-26 121.7 91 63.7
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 2.9e-26 121.7 87 64.4
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 1.1e-25 119.8 90 62.2
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 1.1e-25 119.8 91 58.2
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 1.4e-25 119.4 85 67.1
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 2.5e-25 118.6 87 62.1
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 2.5e-25 118.6 91 60.4
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.5e-25 118.6 90 62.2
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 4.2e-25 117.9 93 60.2
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 5.5e-25 117.5 88 62.5
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 5.5e-25 117.5 90 61.1
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 5.5e-25 117.5 90 61.1
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 7.1e-25 117.1 88 59.1
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.2e-24 116.3 91 63.7
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.2e-24 116.3 92 63.0
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 1.6e-24 115.9 88 60.2
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.6e-24 115.9 61 86.9
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 2.7e-24 115.2 87 57.5
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 6.0e-24 114.0 75 73.3
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 2.3e-23 112.1 92 58.7
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 2.3e-23 112.1 88 59.1
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 2.3e-23 112.1 88 59.1
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.0e-23 111.7 89 58.4
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 8.7e-23 110.2 91 58.2
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.1e-22 109.8 91 60.4
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 2.5e-22 108.6 91 58.2
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 2.5e-22 108.6 91 58.2
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 4.3e-22 107.8 89 59.6
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 1.4e-20 102.8 89 55.1
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 3.1e-20 101.7 65 67.7
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.1e-20 101.3 88 54.5
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 5.3e-20 100.9 82 54.9
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 5.3e-20 100.9 88 55.7
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.5e-19 97.8 88 53.4
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.5e-19 97.8 88 53.4
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.5e-19 97.8 88 53.4
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 5.9e-19 97.4 82 54.9
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.3e-18 96.3 88 52.3
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.3e-18 96.3 85 54.1
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 2.2e-18 95.5 88 52.3
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 2.9e-18 95.1 88 52.3
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 1.4e-17 92.8 88 48.9
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 5.5e-17 90.9 88 51.1
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 1.6e-16 89.4 91 48.4
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 2.5e-14 82.0 57 63.2
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 7.4e-14 80.5 71 57.7
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 7.4e-14 80.5 71 57.7
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 2.4e-12 75.5 82 47.6
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.2e-11 73.2 57 59.6
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 1.5e-11 72.8 64 53.1
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 1.0e-10 70.1 85 36.5
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.4e-09 66.2 75 44.0
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.4e-09 66.2 75 44.0
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 1.9e-09 65.9 77 45.5
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 1.6e-08 62.8 90 36.7
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 6.1e-08 60.8 77 39.0
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 1.1e-06 56.6 64 42.2
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 1.5e-06 56.2 83 31.3
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 2.6e-06 55.5 80 33.8
C01p09080 Brassica napus HOM05D040186 ORTHO05D033310 4.4e-06 54.7 36 69.4
BolC1t00899H Brassica oleracea HOM05D040186 ORTHO05D033310 4.4e-06 54.7 36 69.4
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 4.4e-06 54.7 45 53.3
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 5.7e-06 54.3 43 58.1


User provided reference genes

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