Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 8.7e-91 337.0 181 100.0
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 4.8e-89 331.3 181 98.3
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 6.7e-83 310.8 179 93.3
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 7.4e-82 307.4 181 90.6
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.8e-81 305.4 181 90.6
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 3.8e-78 295.0 182 90.1
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 1.9e-77 292.7 182 87.9
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 1.9e-77 292.7 182 87.9
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 1.9e-77 292.7 182 87.4
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 1.9e-77 292.7 182 87.4
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 4.2e-77 291.6 182 87.4
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 2.7e-76 288.9 182 86.8
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 3.6e-76 288.5 181 86.7
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.0e-75 287.0 182 85.7
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 1.0e-75 287.0 181 86.2
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.0e-75 287.0 182 85.7
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 6.7e-75 284.3 182 85.7
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 6.7e-75 284.3 182 85.7
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 3.3e-74 282.0 182 84.6
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 9.7e-58 227.3 186 67.7
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.8e-56 223.0 182 67.0
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.9e-54 215.7 187 62.6
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 6.5e-54 214.5 188 62.8
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 1.2e-36 157.1 193 53.9
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 3.7e-33 145.6 178 50.6
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 1.9e-32 143.3 185 50.8
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 9.2e-32 141.0 185 50.8
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.2e-31 140.6 182 47.8
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 1.2e-31 140.6 187 49.2
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 2.7e-31 139.4 189 48.7
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 1.3e-30 137.1 184 48.4
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 1.3e-30 137.1 184 48.4
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.7e-30 136.7 180 48.9
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 5.0e-30 135.2 180 47.2
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 6.6e-30 134.8 186 49.5
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 8.6e-30 134.4 185 47.0
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 1.5e-29 133.7 184 45.7
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.9e-29 133.3 184 50.0
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 2.5e-29 132.9 188 46.3
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 3.3e-29 132.5 182 48.4
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 4.3e-29 132.1 183 46.4
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 5.6e-29 131.7 186 48.4
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 7.3e-29 131.3 189 46.6
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 1.2e-28 130.6 177 48.0
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.1e-28 129.8 178 50.0
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.8e-28 129.4 186 45.2
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 6.2e-28 128.3 180 43.3
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 6.2e-28 128.3 181 48.6
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 8.0e-28 127.9 184 45.7
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 8.0e-28 127.9 180 46.1
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.3e-27 126.3 175 49.7
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 5.2e-27 125.2 180 44.4
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.2e-26 124.0 179 44.1
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 1.2e-26 124.0 185 47.0
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.5e-26 123.6 189 45.5
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 2.0e-26 123.2 186 44.6
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 2.0e-26 123.2 176 46.0
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 2.6e-26 122.9 179 44.7
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 2.6e-26 122.9 191 44.5
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 3.4e-26 122.5 179 43.0
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.4e-26 122.1 183 47.0
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 9.8e-26 120.9 183 41.5
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.3e-25 120.6 175 45.7
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 1.3e-25 120.6 185 43.2
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.3e-25 120.6 190 41.6
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.7e-25 120.2 175 45.7
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.2e-25 119.8 175 45.7
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 2.2e-25 119.8 184 44.0
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 2.9e-25 119.4 201 42.3
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 4.9e-25 118.6 190 41.6
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 1.1e-24 117.5 180 43.3
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.1e-24 117.5 187 41.7
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.1e-24 117.5 187 42.2
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 5.4e-24 115.2 186 44.6
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 5.4e-24 115.2 188 41.0
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 7.0e-24 114.8 182 43.4
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.2e-23 114.0 181 42.5
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 2.1e-23 113.2 183 41.5
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.7e-23 112.8 204 39.2
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 2.7e-23 112.8 175 41.1
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 2.7e-23 112.8 181 43.1
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 3.5e-23 112.5 181 42.0
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 6.0e-23 111.7 186 40.3
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 1.0e-22 110.9 190 42.1
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 1.0e-22 110.9 181 44.8
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 2.3e-22 109.8 175 44.6
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 8.6e-22 107.8 178 42.1
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 1.1e-21 107.5 178 42.7
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 1.5e-21 107.1 175 41.1
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.5e-21 107.1 181 42.0
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 3.3e-21 105.9 189 37.6
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 3.3e-21 105.9 186 38.2
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 5.6e-21 105.1 174 44.8
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 5.6e-21 105.1 179 39.1
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 7.3e-21 104.8 182 41.2
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 9.5e-21 104.4 188 42.0
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 2.1e-20 103.2 190 39.5
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 3.6e-20 102.4 180 40.0
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 4.7e-20 102.1 149 49.0
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 4.7e-20 102.1 176 39.8
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 4.7e-20 102.1 189 38.6
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 6.2e-20 101.7 179 39.7
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.1e-19 100.9 168 39.9
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 2.3e-19 99.8 186 38.7
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.2e-18 97.4 182 42.9
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.2e-18 97.4 174 38.5
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 2.6e-18 96.3 188 36.2
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 3.4e-18 95.9 183 35.0
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 3.4e-18 95.9 183 35.0
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 4.4e-18 95.5 181 33.7
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 4.4e-18 95.5 171 36.8
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 4.4e-18 95.5 171 36.8
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 9.9e-18 94.4 157 44.6
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 2.2e-17 93.2 154 46.8
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 3.7e-17 92.4 183 33.9
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 3.7e-17 92.4 181 34.3
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 4.9e-17 92.0 172 34.3
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 6.4e-17 91.7 164 40.9
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 8.3e-17 91.3 166 38.6
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.1e-16 90.9 171 35.1
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 1.4e-16 90.5 186 37.6
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 2.4e-16 89.7 159 41.5
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 4.1e-16 89.0 171 35.1
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 5.4e-16 88.6 176 37.5
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 7.1e-16 88.2 145 44.1
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 9.2e-16 87.8 149 45.0
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 9.2e-16 87.8 153 38.6
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 1.6e-15 87.0 176 36.9
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 1.6e-15 87.0 157 42.7
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 3.5e-15 85.9 171 32.7
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 3.9e-14 82.4 165 33.9
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 6.6e-14 81.6 168 33.9
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 8.6e-14 81.3 134 41.8
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.5e-13 80.5 154 40.3
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 3.3e-13 79.3 69 59.4
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 4.3e-13 79.0 154 39.6
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 7.3e-13 78.2 181 37.6
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 2.1e-12 76.6 190 33.2
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 3.6e-12 75.9 119 42.0
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 4.7e-12 75.5 152 41.4
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.1e-11 72.8 151 34.4
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 6.8e-11 71.6 181 35.4
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 1.2e-10 70.9 186 31.7
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 1.2e-10 70.9 178 30.3
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 8.4e-09 64.7 98 40.8
SMO144G0179 Selaginella moellendorffii HOM05D026704 ORTHO05D030102 2.7e-07 59.7 150 29.3
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.5e-07 59.3 155 33.5
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.0e-06 56.2 152 35.5
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.0e-06 56.2 198 29.3
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 3.0e-06 56.2 54 53.7
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 3.0e-06 56.2 167 30.5
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 5.1e-06 55.5 96 36.5
Os06g0653200 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 5.1e-06 55.5 154 31.2


User provided reference genes

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