Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.1e-170 601.7 295 100.0
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 5.1e-157 557.8 295 93.9
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 8.5e-144 513.8 297 86.2
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.1e-138 496.9 298 84.2
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.9e-135 486.1 302 79.5
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 8.0e-134 480.7 301 79.1
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 3.0e-133 478.8 302 79.5
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 1.5e-132 476.5 300 79.3
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 2.8e-131 472.2 298 79.2
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.8e-130 469.5 301 77.7
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.8e-130 469.5 296 80.1
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 7.7e-129 464.2 295 78.6
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 7.7e-129 464.2 302 77.8
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.6e-118 429.9 294 72.8
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 1.6e-118 429.9 298 73.8
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 4.1e-106 388.7 315 65.1
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 1.0e-104 384.0 295 67.8
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.3e-104 383.6 294 67.7
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 8.3e-99 364.4 295 66.8
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 4.7e-94 348.6 299 62.2
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 5.8e-84 315.1 312 56.1
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 9.2e-82 307.8 312 53.8
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.0e-80 304.3 316 51.3
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.3e-80 303.1 315 53.3
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.9e-80 302.4 314 53.8
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.5e-79 300.4 314 53.5
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.5e-79 300.4 322 51.9
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.5e-79 300.4 322 51.9
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 2.5e-79 299.7 316 52.5
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 5.6e-79 298.5 318 53.1
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 3.6e-78 295.8 322 50.6
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.1e-77 294.3 329 47.7
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 3.1e-77 292.7 318 51.6
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 5.3e-77 292.0 313 52.1
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 1.2e-76 290.8 318 51.9
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 1.5e-76 290.4 288 52.8
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.8e-76 288.5 330 49.1
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 9.9e-76 287.7 302 49.7
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 9.9e-76 287.7 310 50.6
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.3e-75 287.3 323 49.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 3.8e-75 285.8 310 51.6
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 4.9e-75 285.4 318 50.6
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 8.4e-75 284.6 293 52.6
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 8.4e-75 284.6 315 50.5
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.1e-74 284.3 312 51.0
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 3.2e-74 282.7 299 50.2
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 4.2e-74 282.3 301 51.2
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 4.2e-74 282.3 312 50.6
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 7.1e-74 281.6 317 50.2
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 9.3e-74 281.2 330 49.4
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.2e-73 280.8 306 51.3
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.6e-73 280.4 319 51.4
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 4.6e-73 278.9 305 51.8
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.6e-73 278.9 308 51.0
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 6.0e-73 278.5 314 50.0
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 7.8e-73 278.1 322 48.8
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.0e-72 277.7 316 48.7
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.3e-72 277.3 315 49.2
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.3e-72 277.3 317 49.5
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 2.3e-72 276.6 306 49.3
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 2.3e-72 276.6 313 50.5
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 3.0e-72 276.2 305 51.1
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.9e-72 275.8 308 51.0
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.1e-71 274.2 301 45.5
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.5e-71 273.9 306 48.4
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.9e-71 273.5 319 48.3
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.9e-71 273.5 317 50.8
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.3e-71 272.7 295 49.2
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 9.6e-71 271.2 295 49.2
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 2.1e-70 270.0 322 50.0
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 2.1e-70 270.0 331 46.5
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 2.1e-70 270.0 295 46.8
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.6e-70 269.2 307 49.8
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 4.8e-70 268.9 308 47.1
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 4.8e-70 268.9 312 48.1
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 4.8e-70 268.9 307 48.9
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 6.2e-70 268.5 317 48.9
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.1e-69 267.7 318 50.3
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.1e-69 267.7 318 50.3
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.4e-69 267.3 327 45.9
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.8e-69 266.9 313 46.0
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 1.8e-69 266.9 313 48.9
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 9.0e-69 264.6 304 48.7
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 9.0e-69 264.6 323 46.4
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.2e-68 264.2 321 47.0
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.2e-68 264.2 318 47.8
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.5e-68 263.8 148 85.8
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 7.6e-68 261.5 322 46.9
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 1.3e-67 260.8 322 46.0
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.3e-67 260.8 302 49.0
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.7e-67 260.4 305 49.5
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.2e-67 260.0 322 45.7
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 2.2e-67 260.0 305 48.2
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 2.2e-67 260.0 301 49.2
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 2.9e-67 259.6 308 46.4
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 4.9e-67 258.8 313 48.2
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 6.4e-67 258.5 324 47.5
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.1e-66 257.7 320 46.6
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.2e-66 256.1 322 46.3
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 7.1e-66 255.0 322 46.0
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 9.3e-66 254.6 308 47.1
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.6e-65 253.8 307 48.2
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.7e-65 253.1 317 47.6
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 3.5e-65 252.7 324 44.1
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 6.0e-65 251.9 323 45.2
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.1e-63 247.7 311 45.3
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.5e-63 247.3 303 48.2
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 4.3e-63 245.7 243 53.9
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.6e-63 245.4 305 48.9
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 9.6e-63 244.6 227 53.3
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.3e-62 244.2 353 41.6
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.8e-62 243.0 350 41.7
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.8e-62 243.0 350 41.7
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 2.8e-62 243.0 302 48.7
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 2.8e-62 243.0 304 44.7
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 4.8e-62 242.3 323 43.3
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 8.1e-62 241.5 226 53.1
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.4e-61 240.7 169 71.6
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 4.0e-61 239.2 334 45.2
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.6e-60 236.5 318 44.3
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.3e-59 234.2 331 45.3
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.9e-59 232.3 308 43.2
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 4.9e-59 232.3 317 45.1
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.4e-58 230.7 305 43.9
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.4e-58 230.7 320 46.9
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.9e-58 230.3 302 43.4
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 4.6e-57 225.7 243 49.8
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 6.0e-57 225.3 231 50.2
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 3.9e-56 222.6 317 43.8
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 5.1e-56 222.2 250 50.0
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 4.3e-55 219.2 305 42.6
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 5.6e-55 218.8 315 39.7
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.3e-54 217.6 313 40.9
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.6e-54 217.2 239 47.7
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 1.8e-53 213.8 234 48.7
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.2e-52 211.1 314 43.3
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.9e-51 206.5 237 45.6
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 4.9e-51 205.7 281 45.6
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.9e-51 205.7 346 38.2
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.4e-50 204.1 238 46.2
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 3.5e-49 199.5 231 46.3
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 3.5e-49 199.5 231 46.3
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 2.3e-48 196.8 231 45.9
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 8.7e-48 194.9 387 35.7
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 9.7e-47 191.4 303 38.3
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.4e-45 186.8 309 38.2
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.9e-43 179.9 257 44.0
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 4.3e-39 166.0 213 42.7
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 6.3e-38 162.2 283 36.7
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 3.1e-37 159.8 243 39.9
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.5e-36 157.5 167 46.7
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 3.0e-32 143.3 116 53.4
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 1.7e-30 137.5 197 41.6
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.1e-29 133.3 215 37.2
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 2.9e-27 126.7 142 47.9
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 9.4e-26 121.7 212 34.4
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 6.7e-24 115.5 142 44.4
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.4e-21 107.8 151 49.7
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 3.1e-21 106.7 117 47.0
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 2.6e-20 103.6 143 44.8
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 3.5e-20 103.2 208 36.1
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 4.5e-20 102.8 85 52.9
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 7.7e-20 102.1 112 43.8
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 2.2e-19 100.5 256 27.3
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 3.0e-16 90.1 249 29.7
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 3.0e-16 90.1 83 54.2
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.6e-15 87.0 120 45.8
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 7.5e-15 85.5 70 54.3
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.3e-14 84.7 70 52.9
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.7e-14 84.3 108 42.6
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 4.8e-14 82.8 150 35.3
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 1.2e-12 78.2 105 37.1
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 1.2e-12 78.2 155 29.7
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 6.5e-11 72.4 101 45.5
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 5.5e-10 69.3 134 30.6
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 1.4e-08 64.7 55 50.9
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 5.2e-08 62.8 56 48.2
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.4e-07 60.1 121 38.0


User provided reference genes

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