Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 9.9e-118 426.8 213 100.0
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 3.2e-100 368.6 217 87.6
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 2.1e-99 365.9 214 88.3
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 7.9e-99 364.0 214 86.0
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 1.6e-96 356.3 213 84.5
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 1.4e-95 353.2 217 84.3
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 4.0e-95 351.7 217 83.9
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 6.9e-95 350.9 214 84.6
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 6.9e-95 350.9 214 84.6
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 9.0e-95 350.5 217 83.9
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 1.2e-94 350.1 214 84.6
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 1.2e-94 350.1 214 84.6
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 1.7e-93 346.3 213 84.0
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 3.8e-93 345.1 217 82.5
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 6.4e-93 344.4 218 82.1
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 5.4e-92 341.3 217 82.0
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 5.4e-92 341.3 217 82.0
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 5.4e-92 341.3 217 82.0
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 7.1e-92 340.9 214 82.7
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 1.3e-90 336.7 216 78.7
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 8.7e-82 307.4 205 72.2
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 1.9e-81 306.2 188 77.7
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 2.1e-80 302.8 213 72.8
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.1e-80 302.8 196 76.5
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.8e-80 302.4 211 73.9
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 4.8e-80 301.6 194 75.3
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 9.0e-79 297.4 216 70.4
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 1.2e-78 297.0 213 69.5
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 1.5e-78 296.6 204 71.6
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 2.6e-78 295.8 203 70.4
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 3.4e-78 295.4 213 69.5
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 4.5e-78 295.0 200 72.0
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 7.6e-78 294.3 204 69.6
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 7.6e-78 294.3 200 71.5
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 1.3e-77 293.5 188 73.4
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 2.2e-77 292.7 199 73.4
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 2.2e-77 292.7 203 71.4
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 5.0e-77 291.6 191 72.8
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 6.5e-77 291.2 207 71.5
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 6.5e-77 291.2 203 70.4
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 1.1e-76 290.4 189 73.5
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 1.1e-76 290.4 223 66.8
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 1.1e-76 290.4 214 67.3
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.1e-76 290.4 213 69.0
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.4e-76 290.0 184 75.5
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 1.9e-76 289.7 220 67.7
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 1.9e-76 289.7 213 67.6
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 1.9e-76 289.7 211 69.2
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 5.5e-76 288.1 209 67.5
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 7.2e-76 287.7 200 70.0
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 9.3e-76 287.3 205 70.7
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 9.3e-76 287.3 214 69.2
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 3.5e-75 285.4 211 67.8
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 4.6e-75 285.0 205 70.2
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 1.0e-74 283.9 204 70.6
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 1.3e-74 283.5 208 69.2
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 1.3e-74 283.5 210 66.2
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 1.8e-74 283.1 177 74.6
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 3.9e-74 282.0 201 67.7
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 1.9e-73 279.6 204 69.1
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 3.3e-73 278.9 203 68.5
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 4.3e-73 278.5 208 66.8
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 5.7e-73 278.1 208 65.9
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 7.4e-73 277.7 206 68.0
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 1.6e-72 276.6 218 64.2
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 2.2e-72 276.2 206 66.5
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 4.8e-72 275.0 203 68.0
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 4.8e-72 275.0 209 65.1
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 4.8e-72 275.0 178 73.0
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 1.1e-71 273.9 210 64.8
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 1.1e-71 273.9 177 72.9
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 1.4e-71 273.5 218 64.2
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 3.1e-71 272.3 209 65.1
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 3.1e-71 272.3 195 69.2
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 4.1e-71 271.9 209 65.1
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 4.1e-71 271.9 215 66.0
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 5.3e-71 271.6 200 65.5
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 9.0e-71 270.8 202 66.3
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 9.0e-71 270.8 194 67.0
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 1.2e-70 270.4 209 65.6
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.2e-70 270.4 199 69.3
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 1.2e-70 270.4 199 69.3
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 1.5e-70 270.0 209 64.1
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 2.0e-70 269.6 179 72.6
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 2.6e-70 269.2 209 65.1
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 7.7e-70 267.7 199 68.3
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 1.0e-69 267.3 179 71.5
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 1.3e-69 266.9 201 66.2
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 1.3e-69 266.9 201 66.7
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 2.2e-69 266.2 190 65.8
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 2.5e-68 262.7 205 67.3
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 2.5e-68 262.7 206 63.6
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 5.5e-68 261.5 200 65.5
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 9.4e-68 260.8 179 69.3
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 3.6e-67 258.8 173 69.4
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.0e-66 257.3 203 64.0
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 3.0e-66 255.8 194 65.5
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 6.7e-66 254.6 192 66.1
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 6.7e-66 254.6 204 62.3
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.1e-65 253.8 203 62.1
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 1.1e-65 253.8 203 65.0
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 1.5e-65 253.4 203 64.0
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 9.7e-65 250.8 199 63.8
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 5.3e-63 245.0 203 59.6
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 5.3e-63 245.0 177 65.5
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 1.9e-60 236.5 207 61.8
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 2.5e-60 236.1 217 60.8
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 1.6e-59 233.4 197 59.9
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 2.1e-59 233.0 216 59.7
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 2.7e-59 232.6 197 59.4
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 1.5e-57 226.9 228 53.1
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 2.6e-57 226.1 276 44.6
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 7.4e-57 224.6 286 45.5
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 3.1e-55 219.2 193 58.5
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 7.0e-55 218.0 193 58.5
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 4.5e-54 215.3 193 57.0
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 5.9e-54 214.9 169 59.2
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 7.2e-52 208.0 191 55.0
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 1.0e-50 204.1 135 71.9
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 1.8e-50 203.4 167 62.9
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 1.3e-48 197.2 140 67.1
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 1.1e-47 194.1 116 78.4
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 1.1e-47 194.1 140 63.6
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 9.1e-47 191.0 204 54.4
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.0e-45 187.6 151 64.9
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 8.5e-45 184.5 134 69.4
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.8e-42 176.8 144 62.5
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 4.0e-42 175.6 91 91.2
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 8.8e-42 174.5 151 60.9
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.5e-41 173.7 167 56.3
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 3.7e-40 169.1 140 64.3
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 5.9e-38 161.8 107 69.2
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 3.8e-37 159.1 122 63.9
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 1.1e-36 157.5 140 60.7
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 1.1e-36 157.5 143 60.1
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 2.5e-36 156.4 134 56.7
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 2.1e-35 153.3 113 60.2
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 6.8e-34 148.3 159 55.3
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 2.6e-33 146.4 113 58.4
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 4.3e-28 129.0 90 72.2
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 2.3e-21 106.7 72 68.1
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 6.2e-19 98.6 66 72.7
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 3.7e-16 89.4 76 55.3
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 3.2e-15 86.3 86 54.7
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 1.5e-12 77.4 59 61.0
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 6.2e-11 72.0 54 57.4
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 1.1e-10 71.2 166 34.3
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.8e-10 70.5 48 70.8
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 3.1e-10 69.7 46 60.9
BolC3t21104H Brassica oleracea HOM05D046859 ORTHO05D040831 9.8e-09 64.7 54 63.0


User provided reference genes

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