Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 0.0e+00 1422.1 906 100.0
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.3e-304 1049.7 828 75.4
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 2.9e-291 1005.4 922 67.4
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.3e-288 995.7 935 65.1
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.7e-281 972.2 935 64.8
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 7.8e-281 970.7 931 65.0
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 3.6e-278 961.8 926 66.7
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 1.8e-277 959.5 936 64.0
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 3.2e-274 948.7 920 65.7
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 4.1e-274 948.3 932 64.1
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 1.2e-273 946.8 927 60.8
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 3.5e-273 945.3 916 65.3
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 1.0e-272 943.7 920 65.4
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 3.5e-265 918.7 935 61.1
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 1.0e-256 890.6 929 60.5
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 2.7e-204 716.5 905 52.5
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 4.5e-204 715.7 907 48.2
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 2.9e-203 713.0 909 53.6
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 3.2e-202 709.5 923 56.0
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.7e-201 706.4 912 52.3
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 4.7e-201 705.7 933 48.3
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 8.0e-201 704.9 922 49.9
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 1.7e-198 697.2 908 51.4
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.8e-198 696.4 929 49.1
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 1.1e-194 684.5 910 51.8
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 4.2e-194 682.6 924 48.6
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 2.1e-193 680.2 916 50.5
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 1.0e-192 677.9 930 47.8
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 5.2e-192 675.6 927 49.3
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 6.8e-192 675.2 920 48.4
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 7.5e-191 671.8 914 47.8
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 1.3e-190 671.0 908 51.4
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 2.8e-190 669.8 905 51.5
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.0e-188 663.7 958 49.4
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 1.5e-186 657.5 911 50.9
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 1.9e-186 657.1 924 48.2
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 2.5e-186 656.8 907 53.5
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.6e-185 654.1 917 48.0
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 6.1e-185 652.1 911 47.6
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.4e-184 651.0 911 50.5
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 4.0e-184 649.4 933 45.3
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 6.8e-184 648.7 926 47.0
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 6.8e-184 648.7 922 48.0
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.0e-183 647.1 917 50.9
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 7.5e-183 645.2 930 47.0
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 1.3e-182 644.4 935 44.4
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.7e-182 642.9 930 48.7
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 4.9e-182 642.5 916 49.9
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 6.4e-182 642.1 916 49.1
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.1e-181 641.3 930 48.6
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 3.5e-180 636.3 920 46.4
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 2.3e-179 633.6 909 46.9
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 5.0e-179 632.5 922 45.1
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 6.6e-179 632.1 941 44.1
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 8.6e-179 631.7 922 44.0
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 8.6e-179 631.7 907 44.8
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 1.9e-178 630.6 908 48.1
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.9e-178 630.6 939 46.4
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 3.3e-178 629.8 922 45.1
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.1e-177 627.1 945 43.3
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 2.1e-177 627.1 915 51.3
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 8.0e-177 625.2 939 45.0
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 1.0e-176 624.8 920 52.9
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 1.8e-176 624.0 923 45.3
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 6.8e-176 622.1 920 49.7
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.2e-175 621.3 911 46.0
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 4.4e-175 619.4 943 43.5
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 5.8e-175 619.0 916 44.8
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 1.3e-174 617.8 904 49.0
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.3e-174 617.8 919 43.7
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 2.2e-174 617.1 909 45.5
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 4.1e-173 612.8 911 46.3
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 5.4e-173 612.5 916 43.7
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 5.4e-173 612.5 913 48.4
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 1.2e-172 611.3 946 45.1
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 6.0e-172 609.0 930 44.8
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 2.3e-171 607.1 893 45.4
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.6e-169 600.9 915 44.9
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.6e-169 600.9 917 51.1
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 4.7e-169 599.4 922 43.1
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 8.1e-169 598.6 913 47.3
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 3.1e-168 596.7 908 46.3
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 3.1e-168 596.7 923 46.3
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.2e-166 590.5 917 45.9
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 5.4e-165 585.9 883 47.3
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 4.6e-164 582.8 939 43.3
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 6.0e-164 582.4 925 44.2
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 3.3e-162 576.6 891 42.9
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 5.6e-162 575.9 923 44.9
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 8.1e-161 572.0 918 44.8
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.1e-160 571.6 972 43.8
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.5e-159 567.8 905 42.8
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 4.9e-158 562.8 915 42.8
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 5.4e-157 559.3 909 46.0
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 3.5e-156 556.6 908 45.2
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-155 554.7 923 41.9
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 1.9e-149 534.3 789 51.0
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.3e-147 528.1 920 42.2
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 3.3e-146 523.5 638 55.6
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 7.3e-146 522.3 903 41.7
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.4e-141 508.1 899 42.2
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 8.1e-137 492.3 869 40.7
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 2.4e-136 490.7 762 44.5
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.6e-129 468.0 922 42.1
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 4.0e-128 463.4 921 40.8
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.3e-126 458.4 920 37.4
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 2.3e-123 447.6 946 37.0
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.0e-123 447.2 909 35.6
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 6.3e-121 439.5 909 35.8
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.8e-120 438.0 909 35.6
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.9e-114 417.9 912 37.3
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 2.2e-113 414.5 485 47.4
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 3.6e-108 397.1 650 45.5
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 5.1e-107 393.3 721 46.9
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 9.1e-104 382.5 792 42.0
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.7e-100 370.9 952 34.2
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 2.6e-98 364.4 849 36.5
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 8.0e-92 342.8 933 39.3
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 1.0e-91 342.4 819 34.6
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 7.5e-90 336.3 516 44.6
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 9.7e-90 335.9 474 54.2
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 5.3e-88 330.1 547 46.1
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 2.2e-86 324.7 340 54.7
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 7.2e-85 319.7 314 55.7
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 4.1e-80 303.9 667 39.0
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 4.1e-80 303.9 628 37.4
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 1.3e-73 282.3 466 38.6
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.8e-72 278.5 280 53.6
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 1.4e-67 262.3 931 32.9
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 7.5e-66 256.5 580 35.9
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 2.0e-63 248.4 580 33.3
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 8.6e-62 243.0 567 31.6
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 6.6e-54 216.9 946 32.8
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 3.6e-52 211.1 131 84.0
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 1.7e-49 202.2 885 27.5
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 1.0e-46 193.0 496 30.8
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 3.6e-44 184.5 393 45.8
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 4.6e-39 167.5 186 54.3
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.3e-38 165.2 450 48.2
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 3.3e-37 161.4 219 46.6
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 9.6e-37 159.8 563 26.5
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 1.1e-29 136.3 136 55.1
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 2.8e-28 131.7 96 71.9
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 4.0e-27 127.9 143 52.4
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 9.0e-27 126.7 98 70.4
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.4e-25 120.2 457 29.5
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.7e-22 110.5 142 50.0
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.4e-21 107.1 369 30.9
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.3e-20 106.3 126 49.2
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.1e-19 101.7 102 59.8
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.0e-19 100.1 381 29.1
BcaB07g32274 Brassica carinata HOM05D003551 ORTHO05D004869 1.2e-18 99.8 58 86.2
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.6e-15 89.4 81 54.3
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 4.6e-15 87.8 77 57.1
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.3e-13 81.6 151 41.7
BcaB08g34419 Brassica carinata HOM05D003551 ORTHO05D004869 4.3e-13 81.3 89 60.7
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.6e-12 79.3 111 45.0
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.8e-12 77.8 137 41.6
A04p22140 Brassica napus HOM05D003551 ORTHO05D103594 8.2e-12 77.0 44 77.3
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-11 76.3 80 55.0
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.3e-11 74.3 406 27.8
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-10 73.2 180 35.6
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-09 69.7 112 42.0
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 4.9e-09 67.8 51 70.6
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.4e-09 67.0 80 47.5
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 1.4e-08 66.2 62 59.7
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 1.9e-08 65.9 74 47.3
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.5e-08 65.5 69 49.3
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.0e-07 60.8 130 34.6
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.0e-07 60.8 160 35.6
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-06 59.3 205 32.2
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-06 59.3 346 31.2
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.3e-06 58.9 152 35.5
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.0e-06 58.5 62 48.4
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 6.7e-06 57.4 64 54.7


User provided reference genes

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