Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 0.0e+00 1558.9 769 100.0
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 0.0e+00 1396.3 770 90.6
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 0.0e+00 1149.8 802 74.2
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 0.0e+00 1088.9 636 84.0
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 1.3e-308 1062.8 771 71.1
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 4.4e-285 984.6 770 67.0
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 5.4e-267 924.5 771 65.2
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 1.3e-244 850.1 810 56.7
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.9e-243 846.3 811 55.9
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 9.3e-243 844.0 806 56.9
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 1.3e-241 840.1 806 56.5
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 3.9e-241 838.6 812 55.0
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 5.1e-241 838.2 806 56.3
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 5.1e-241 838.2 806 56.3
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 6.7e-241 837.8 810 56.4
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.1e-240 837.0 816 55.1
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 3.3e-240 835.5 819 55.9
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.4e-238 830.1 816 54.9
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 1.2e-229 800.4 820 53.3
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 1.0e-228 797.3 813 53.6
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 2.7e-218 762.7 805 52.4
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 2.8e-202 709.5 823 47.9
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 1.2e-200 704.1 823 47.4
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 2.4e-198 696.4 827 47.0
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 5.4e-198 695.3 825 47.3
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.0e-197 693.3 823 47.1
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 2.0e-197 693.3 823 47.4
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 3.5e-197 692.6 824 47.2
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 3.8e-196 689.1 810 47.2
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 3.3e-195 686.0 822 47.1
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 7.3e-195 684.9 822 46.6
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.6e-194 683.7 824 46.6
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 6.8e-193 678.3 821 47.1
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 1.3e-191 674.1 821 46.9
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 2.9e-191 672.9 823 46.2
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 3.2e-190 669.5 817 45.8
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 9.2e-190 667.9 788 47.1
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.6e-189 667.2 820 45.4
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 1.6e-189 667.2 822 45.6
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 2.0e-189 666.8 817 45.7
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 1.0e-188 664.5 822 44.6
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 1.1e-187 661.0 819 45.4
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 2.5e-187 659.8 824 45.5
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 4.3e-187 659.1 824 45.5
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 7.3e-187 658.3 820 45.4
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 2.1e-186 656.8 818 45.8
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 2.8e-186 656.4 823 45.7
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 1.8e-185 653.7 819 45.2
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 2.3e-185 653.3 815 44.4
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 4.0e-185 652.5 822 44.4
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 5.2e-185 652.1 813 45.5
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.2e-184 651.0 818 45.2
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 2.0e-184 650.2 819 44.8
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 5.8e-184 648.7 811 45.6
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 1.2e-181 641.0 885 42.7
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 3.5e-181 639.4 814 44.8
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 7.8e-181 638.3 816 44.6
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 3.0e-180 636.3 814 44.3
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 1.1e-179 634.4 820 43.9
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.5e-179 634.0 819 43.7
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.9e-179 633.6 816 44.4
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 4.3e-179 632.5 821 43.1
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 5.6e-179 632.1 815 44.0
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 9.5e-179 631.3 814 44.0
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 1.6e-178 630.6 816 44.5
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 1.6e-178 630.6 825 42.8
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 2.8e-178 629.8 820 42.6
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 3.6e-178 629.4 819 43.5
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 8.1e-178 628.2 821 43.4
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 8.1e-178 628.2 854 43.4
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 1.4e-177 627.5 821 43.6
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 2.3e-177 626.7 819 44.0
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 2.3e-177 626.7 817 43.0
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 6.8e-177 625.2 823 44.3
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 6.8e-177 625.2 820 43.2
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 2.6e-176 623.2 815 43.6
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 1.7e-175 620.5 814 43.0
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 2.9e-175 619.8 817 44.2
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 6.4e-175 618.6 816 43.6
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.4e-174 617.5 815 43.6
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.2e-174 616.3 872 41.1
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 4.6e-173 612.5 819 44.3
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 4.6e-173 612.5 817 43.7
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 7.8e-173 611.7 820 43.7
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.7e-172 610.5 817 43.8
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 5.1e-172 609.0 844 43.2
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 9.5e-171 604.7 815 42.8
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 2.1e-170 603.6 811 43.5
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 2.1e-170 603.6 832 42.5
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 1.1e-169 601.3 827 41.1
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 5.8e-168 595.5 805 42.2
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 4.3e-163 579.3 828 41.3
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.1e-158 564.7 814 40.5
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 4.6e-157 559.3 812 39.7
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 3.3e-155 553.1 825 40.8
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 4.3e-155 552.7 812 39.3
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 1.6e-154 550.8 817 41.1
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 6.2e-154 548.9 641 46.3
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 6.0e-149 532.3 739 42.1
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.0e-148 531.6 822 39.4
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.0e-148 531.6 802 39.2
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.0e-148 531.6 813 37.4
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 3.1e-145 520.0 594 49.0
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.8e-143 513.1 830 38.1
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 2.6e-136 490.3 812 38.2
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 2.5e-134 483.8 549 49.0
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 6.7e-132 475.7 818 36.3
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 4.5e-128 463.0 378 66.1
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 1.2e-125 454.9 833 34.6
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 2.5e-123 447.2 764 41.0
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 4.8e-106 389.8 468 46.6
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 3.8e-103 380.2 850 30.1
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.5e-102 378.3 579 38.3
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 7.0e-97 359.4 748 32.9
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 4.5e-96 356.7 767 32.1
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 6.5e-95 352.8 741 31.6
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 7.0e-89 332.8 340 52.9
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.9e-74 284.3 480 38.3
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.1e-70 272.3 625 30.2
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.7e-66 258.5 432 39.6
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 4.4e-51 207.2 262 48.1
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 3.8e-50 204.1 262 47.7
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 5.4e-49 200.3 262 47.3
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 3.5e-48 197.6 696 25.4
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.9e-38 165.2 105 79.0
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 3.3e-38 164.5 159 51.6
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 3.1e-36 157.9 604 26.7
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 4.2e-33 147.5 183 43.2
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 1.1e-25 122.9 496 24.6
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 7.9e-24 116.7 159 44.0
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 3.3e-22 111.3 104 52.9
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 2.6e-19 101.7 194 30.9
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 3.0e-15 88.2 70 64.3
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 8.7e-15 86.7 70 64.3
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 4.3e-14 84.3 61 70.5
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.5e-11 75.9 88 46.6
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.0e-11 75.5 141 34.8
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 9.4e-09 66.6 122 33.6
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 2.1e-08 65.5 130 32.3


User provided reference genes

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