Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 6.5e-185 650.6 330 100.0
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 1.2e-162 576.6 333 88.9
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 1.4e-155 553.1 333 86.8
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 5.4e-155 551.2 333 85.3
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 2.9e-153 545.4 330 84.8
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 5.0e-145 518.1 330 81.8
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 9.5e-144 513.8 330 80.6
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 4.7e-143 511.5 331 81.3
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 2.9e-140 502.3 331 79.8
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 2.9e-140 502.3 331 79.8
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 1.3e-137 493.4 333 77.8
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 3.8e-124 448.7 333 76.3
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 1.4e-123 446.8 321 77.6
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 7.8e-122 441.0 322 77.3
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 9.0e-118 427.6 337 72.7
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 6.4e-116 421.4 332 73.2
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 2.9e-108 396.0 331 62.5
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 1.2e-85 320.9 336 58.6
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 2.2e-55 220.3 165 72.1
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 2.8e-55 219.9 221 57.0
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 5.4e-54 215.7 371 41.8
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 7.7e-53 211.8 146 74.0
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 2.7e-50 203.4 373 40.8
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 1.0e-49 201.4 329 42.6
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.4e-49 201.1 403 38.7
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 8.8e-49 198.4 327 41.9
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 1.5e-48 197.6 373 38.9
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.6e-48 196.8 377 40.8
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 5.7e-48 195.7 327 42.5
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 2.2e-47 193.7 350 40.0
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 2.2e-47 193.7 347 40.3
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 4.9e-47 192.6 373 40.5
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 4.9e-47 192.6 326 41.4
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 6.3e-47 192.2 379 39.8
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 8.3e-47 191.8 380 38.7
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 4.1e-46 189.5 325 40.9
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 5.4e-46 189.1 325 42.5
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 5.4e-46 189.1 349 38.7
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 3.5e-45 186.4 368 38.9
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.5e-45 186.0 349 40.1
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 5.9e-45 185.7 327 41.6
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 5.9e-45 185.7 356 39.3
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 7.7e-45 185.3 366 39.9
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.0e-44 184.9 403 37.7
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 1.0e-44 184.9 301 42.9
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 1.7e-44 184.1 370 38.9
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 2.3e-44 183.7 364 40.1
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 2.9e-44 183.3 302 44.0
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 5.0e-44 182.6 327 40.1
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 6.6e-44 182.2 389 38.0
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 8.6e-44 181.8 403 37.7
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 1.5e-43 181.0 328 39.9
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 2.5e-43 180.3 345 40.6
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 4.2e-43 179.5 338 40.5
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 4.2e-43 179.5 372 38.7
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 5.5e-43 179.1 323 41.5
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 8.0e-42 175.3 324 40.1
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 8.0e-42 175.3 342 38.6
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 1.0e-41 174.9 396 38.1
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 1.0e-41 174.9 322 39.8
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 1.8e-41 174.1 329 39.8
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 6.8e-41 172.2 304 41.8
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 1.2e-40 171.4 341 38.4
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 2.0e-40 170.6 340 38.2
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 3.4e-40 169.9 366 39.3
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 4.4e-40 169.5 339 39.8
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 5.7e-40 169.1 369 37.4
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 5.7e-40 169.1 361 35.5
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 5.7e-40 169.1 402 36.8
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 9.8e-40 168.3 308 42.2
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 1.7e-39 167.5 382 38.2
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 7.0e-38 162.2 366 40.2
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 7.0e-38 162.2 307 38.8
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 7.0e-38 162.2 306 41.2
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 7.0e-38 162.2 338 40.2
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 9.2e-38 161.8 364 36.3
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 1.2e-37 161.4 383 36.6
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 2.7e-37 160.2 372 36.6
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 3.5e-37 159.8 334 40.1
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 4.6e-37 159.5 307 38.1
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 7.8e-37 158.7 343 39.4
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.0e-36 158.3 307 37.8
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 1.7e-36 157.5 362 36.2
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.7e-36 157.5 343 37.9
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 1.7e-36 157.5 333 39.0
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 2.9e-36 156.8 373 37.3
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 5.0e-36 156.0 351 37.6
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 8.6e-36 155.2 325 36.6
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.1e-35 154.8 339 36.0
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 1.1e-35 154.8 317 37.9
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.1e-35 154.8 373 35.1
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 3.3e-35 153.3 323 37.2
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 1.2e-34 151.4 260 42.7
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.8e-34 150.2 313 38.3
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 4.7e-34 149.4 107 72.9
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 4.7e-34 149.4 107 72.9
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 4.7e-34 149.4 296 39.9
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 6.8e-33 145.6 440 33.0
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 1.2e-32 144.8 365 35.3
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 2.0e-32 144.1 340 36.2
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 3.4e-32 143.3 348 36.8
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 4.4e-32 142.9 339 36.9
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 7.5e-32 142.1 394 33.0
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 1.1e-30 138.3 385 36.1
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 2.4e-30 137.1 308 37.3
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 5.4e-30 136.0 271 36.9
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 7.0e-30 135.6 397 32.5
CARHR240540 Cardamine hirsuta HOM05D005141 ORTHO05D006250 1.6e-29 134.4 78 85.9
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 2.7e-29 133.7 308 36.0
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 6.0e-29 132.5 330 36.4
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.3e-28 131.3 337 34.4
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 1.7e-28 131.0 206 45.6
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 2.3e-28 130.6 209 44.5
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 3.9e-28 129.8 326 34.0
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 6.6e-28 129.0 272 37.9
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.5e-27 127.9 265 38.5
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 9.5e-27 125.2 249 35.7
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 8.1e-26 122.1 211 43.6
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 6.8e-25 119.0 152 48.7
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 5.8e-24 115.9 313 32.3
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 7.5e-24 115.5 306 34.0
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 7.5e-24 115.5 375 31.5
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 1.3e-23 114.8 265 35.5
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 2.2e-23 114.0 297 35.7
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 1.9e-22 110.9 76 73.7
CARHR240550 Cardamine hirsuta HOM05D005141 ORTHO05D006250 1.2e-21 108.2 60 86.7
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 3.5e-21 106.7 231 38.1
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 8.6e-20 102.1 347 32.3
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 4.0e-17 93.2 119 47.9
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 6.4e-15 85.9 145 42.1
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 1.6e-13 81.3 120 43.3
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.7e-13 80.5 139 41.0
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 4.6e-13 79.7 129 43.4
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.3e-12 78.2 134 39.6
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 3.9e-12 76.6 85 52.9
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 4.3e-11 73.2 131 37.4
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 6.2e-10 69.3 126 38.1
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 1.4e-09 68.2 67 59.7
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 7.6e-08 62.4 254 29.5
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 2.2e-07 60.8 173 30.6
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 2.4e-06 57.4 86 39.5


User provided reference genes

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