Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 8.9e-143 510.4 279 100.0
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.6e-123 446.4 283 89.4
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 2.1e-107 392.9 279 79.2
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.5e-105 386.7 285 77.5
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 4.3e-105 385.2 282 78.7
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 7.1e-100 367.9 280 76.1
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 7.1e-100 367.9 280 76.1
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 2.1e-99 366.3 284 75.0
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 4.6e-99 365.2 281 74.4
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 7.4e-97 357.8 286 72.7
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.0e-93 347.4 288 74.0
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 4.9e-93 345.1 286 73.8
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 3.5e-91 339.0 280 72.1
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 2.8e-88 329.3 214 88.3
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 2.4e-87 326.2 281 71.2
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 3.2e-84 315.8 274 70.4
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 6.5e-77 291.6 275 64.7
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 2.9e-69 266.2 286 59.8
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 1.5e-60 237.3 201 71.6
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 1.8e-55 220.3 185 72.4
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 6.6e-29 132.1 289 38.4
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 7.3e-28 128.6 297 35.0
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.2e-27 125.6 297 35.4
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 8.0e-27 125.2 295 35.9
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 2.6e-25 120.2 301 33.9
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 4.4e-25 119.4 284 36.3
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 4.4e-25 119.4 283 33.9
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 9.8e-25 118.2 301 33.6
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 3.7e-24 116.3 307 31.3
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 4.9e-24 115.9 300 33.7
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 1.1e-23 114.8 303 34.3
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 2.4e-23 113.6 296 34.1
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 4.1e-23 112.8 294 32.7
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 5.4e-23 112.5 299 35.1
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 7.0e-23 112.1 282 34.0
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 2.0e-22 110.5 299 32.1
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.0e-22 110.5 301 35.5
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 2.7e-22 110.2 309 35.0
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 6.0e-22 109.0 295 34.6
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 7.8e-22 108.6 278 32.7
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.3e-21 107.8 301 33.6
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.0e-21 106.7 300 33.3
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 3.0e-21 106.7 286 32.5
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 3.9e-21 106.3 300 33.7
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.1e-20 104.8 284 33.5
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.5e-20 104.4 296 33.4
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 1.5e-20 104.4 287 33.1
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 2.5e-20 103.6 281 34.9
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 5.6e-20 102.4 344 31.1
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 5.6e-20 102.4 297 33.3
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 9.5e-20 101.7 299 32.8
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 9.5e-20 101.7 284 32.4
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 1.6e-19 100.9 285 33.3
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.1e-19 100.5 288 32.3
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 6.2e-19 99.0 286 31.5
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 6.2e-19 99.0 283 31.8
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 6.2e-19 99.0 289 30.4
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 1.8e-18 97.4 257 31.9
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.8e-18 97.4 278 33.1
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 3.1e-18 96.7 274 34.7
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 6.8e-18 95.5 283 32.5
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 6.8e-18 95.5 288 29.9
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 2.6e-17 93.6 292 30.1
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 2.6e-17 93.6 285 30.9
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 5.8e-17 92.4 275 30.9
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 5.8e-17 92.4 275 30.9
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 5.8e-17 92.4 285 31.6
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 9.9e-17 91.7 290 31.4
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 9.9e-17 91.7 162 40.7
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 1.3e-16 91.3 272 32.7
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 1.3e-16 91.3 298 31.5
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 1.7e-16 90.9 274 33.9
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.7e-16 90.9 296 30.7
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 2.9e-16 90.1 282 31.2
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 3.7e-16 89.7 277 31.4
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 3.7e-16 89.7 288 31.9
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 6.4e-16 89.0 296 30.4
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 6.4e-16 89.0 289 29.4
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 6.4e-16 89.0 287 28.9
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 1.9e-15 87.4 293 29.0
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 5.4e-15 85.9 283 31.4
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 7.1e-15 85.5 287 30.7
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 1.6e-14 84.3 284 29.6
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 2.1e-14 84.0 292 28.8
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 2.7e-14 83.6 273 31.5
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 2.7e-14 83.6 284 30.3
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 6.0e-14 82.4 277 29.2
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 6.0e-14 82.4 275 28.0
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 2.3e-13 80.5 330 28.8
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 3.0e-13 80.1 300 29.7
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 3.0e-13 80.1 302 32.8
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 6.6e-13 79.0 291 30.2
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 1.5e-12 77.8 275 26.9
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 1.5e-12 77.8 281 29.9
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.5e-12 77.8 282 29.8
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.5e-12 77.0 280 30.0
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 2.5e-12 77.0 272 30.9
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 4.3e-12 76.3 286 29.7
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 5.6e-12 75.9 273 26.7
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 7.3e-12 75.5 287 29.3
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 9.5e-12 75.1 271 29.5
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 9.5e-12 75.1 299 29.8
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 1.2e-11 74.7 277 28.2
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 2.1e-11 73.9 283 30.4
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 2.1e-11 73.9 275 28.7
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 2.8e-11 73.6 271 29.5
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.8e-11 73.6 303 28.4
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 2.8e-11 73.6 349 27.5
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 3.6e-11 73.2 271 29.2
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 4.7e-11 72.8 271 29.2
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 4.7e-11 72.8 287 29.3
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 6.2e-11 72.4 278 28.8
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 8.1e-11 72.0 281 29.2
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 8.1e-11 72.0 288 28.1
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 1.1e-10 71.6 349 27.8
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 2.4e-10 70.5 233 29.2
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 3.1e-10 70.1 274 29.2
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 3.1e-10 70.1 293 28.3
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 4.0e-10 69.7 254 30.3
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 5.2e-10 69.3 311 29.3
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 5.2e-10 69.3 287 27.2
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 6.8e-10 68.9 176 35.8
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 6.8e-10 68.9 287 27.2
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 2.6e-09 67.0 199 34.7
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 3.4e-09 66.6 291 28.2
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 4.4e-09 66.2 292 27.1
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 5.8e-09 65.9 156 34.6
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 5.8e-09 65.9 274 26.3
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 7.6e-09 65.5 161 33.5
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 7.6e-09 65.5 294 26.5
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 9.9e-09 65.1 312 29.8
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 1.7e-08 64.3 140 33.6
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.7e-08 64.3 279 27.6
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.7e-08 64.3 274 28.1
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 2.2e-08 63.9 271 29.5
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 2.2e-08 63.9 276 26.8
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 2.2e-08 63.9 285 28.4
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 6.4e-08 62.4 263 27.8
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.9e-07 60.8 315 25.7
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 3.2e-07 60.1 215 28.8
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 4.1e-07 59.7 278 26.6
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 7.1e-07 58.9 291 25.8
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 9.2e-07 58.5 263 28.5
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 9.2e-07 58.5 278 25.5
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.2e-06 58.2 128 34.4
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 1.6e-06 57.8 159 30.2
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.6e-06 57.8 277 29.2
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 2.1e-06 57.4 280 27.1
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 3.5e-06 56.6 274 26.3
Pp3c2_32720 Physcomitrium patens HOM05D003500 ORTHO05D003919 3.5e-06 56.6 306 26.8
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 3.5e-06 56.6 301 26.6
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 4.6e-06 56.2 285 26.3
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 4.6e-06 56.2 278 26.3
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 6.0e-06 55.8 273 26.7
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.0e-06 55.8 295 25.8
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 7.8e-06 55.5 272 26.1


User provided reference genes

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