Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 3691.7 1856 100.0
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 3467.6 1860 93.5
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 3345.4 1863 90.6
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 3252.2 1863 88.1
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 3177.1 1829 88.1
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 3175.6 1862 85.9
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 3169.8 1863 85.9
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 3130.5 1892 84.1
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 3127.8 1862 84.8
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 3103.2 1891 83.4
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2815.8 1825 78.1
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2802.7 1844 77.1
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2677.9 1885 72.8
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2122.1 1901 59.6
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2119.7 1900 59.2
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2119.0 1939 59.3
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2109.0 1878 59.6
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2103.2 1900 59.4
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2096.6 1901 59.5
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2096.2 1915 58.7
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2087.8 1946 58.2
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2083.5 1953 57.7
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2075.4 1907 58.6
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2072.7 1896 58.9
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2070.8 1938 57.9
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2066.6 1959 57.6
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2060.0 1914 58.2
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2057.7 1904 58.8
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2057.7 1940 57.1
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2045.8 1907 58.1
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2041.9 1886 57.6
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2040.0 1883 58.3
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2028.1 1900 58.6
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2020.7 2022 54.9
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2013.0 1911 56.7
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2009.6 1931 55.9
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2005.3 1937 56.2
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1996.5 1948 55.6
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1991.9 1927 55.9
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1990.7 1926 55.2
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1988.4 1971 55.1
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1988.0 1912 56.3
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1986.1 1912 56.6
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1983.0 1893 56.5
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1982.2 1903 56.5
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1981.1 1904 56.1
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1978.4 1869 57.8
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1975.7 1916 56.3
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1968.7 1935 55.5
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 1968.4 1904 56.8
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1936.4 1943 55.2
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1935.2 1902 55.3
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1927.9 1935 54.0
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1923.7 1915 55.5
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1916.4 1895 54.2
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1913.7 2036 52.9
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1909.8 1973 52.9
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1900.6 1936 53.9
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1897.1 1770 58.7
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1896.7 1942 53.6
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1895.9 1918 52.7
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1893.6 1892 53.6
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1889.0 1904 53.8
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1881.7 1886 54.3
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1865.9 1908 52.6
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1859.0 1894 52.6
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1859.0 1862 54.0
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1857.8 1945 53.0
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1847.8 1873 54.5
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1827.8 2030 50.2
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1826.2 1852 53.6
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1800.4 1849 53.3
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1800.0 1929 52.5
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1794.6 1874 52.7
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1775.0 1756 54.5
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1769.2 1931 50.5
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1745.7 1850 51.0
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1744.6 1873 50.8
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1721.4 1874 52.2
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1718.0 1907 50.6
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1700.3 2110 47.1
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1619.4 1885 49.4
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1575.5 1579 55.2
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1504.6 1536 52.7
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1408.3 1742 47.3
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1403.3 1867 44.6
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1317.8 1347 54.2
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 0.0e+00 1276.9 710 90.4
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1219.1 2133 37.1
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1198.7 1041 61.2
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1179.9 2172 36.4
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1148.3 1884 37.8
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 1.8e-308 1063.5 2063 34.6
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 5.2e-263 912.5 691 67.0
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 3.2e-228 797.0 776 55.3
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 4.9e-221 773.1 1175 41.3
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 3.6e-216 756.9 1345 37.7
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.5e-209 734.9 672 58.2
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 8.4e-197 692.6 1311 34.9
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 3.4e-190 670.6 762 50.0
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 1.0e-178 632.5 718 49.7
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 1.4e-154 552.4 790 43.8
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 6.0e-110 404.1 358 57.3
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 1.7e-109 402.5 389 53.7
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 7.8e-102 377.1 224 84.8
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 1.6e-70 273.1 223 62.3
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 2.7e-70 272.3 202 66.3
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 2.0e-65 256.1 484 38.2
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 9.7e-60 237.3 293 47.4
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 7.7e-57 227.6 282 45.7
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.4e-53 216.9 271 43.9
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.5e-52 212.6 218 54.6
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 4.1e-50 205.3 124 77.4
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 2.8e-35 156.0 237 43.0
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 6.1e-30 138.3 154 46.8
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 9.1e-26 124.4 80 73.8
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 7.7e-25 121.3 128 51.6
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 9.4e-23 114.4 485 25.2
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 2.4e-18 99.8 108 49.1
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 3.5e-17 95.9 69 63.8
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 1.8e-13 83.6 87 51.7
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 2.6e-12 79.7 88 48.9
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 2.8e-11 76.3 67 47.8
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 3.2e-10 72.8 77 50.6
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 3.5e-09 69.3 61 49.2
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 5.0e-08 65.5 303 27.1
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 5.6e-07 62.0 86 38.4


User provided reference genes

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