Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 2.1e-99 365.5 168 100.0
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 1.2e-97 359.8 168 98.2
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 1.5e-97 359.4 168 97.6
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 9.9e-97 356.7 168 97.6
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 6.4e-96 354.0 168 97.0
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 3.2e-95 351.7 168 95.8
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 3.2e-95 351.7 168 95.8
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 1.6e-94 349.4 168 95.2
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 1.6e-94 349.4 168 95.2
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 2.7e-94 348.6 168 95.2
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 3.5e-94 348.2 168 94.6
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 4.6e-94 347.8 168 94.6
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 8.7e-93 343.6 178 90.4
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 3.4e-89 331.6 168 91.1
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 5.4e-87 324.3 168 89.9
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 1.4e-74 283.1 136 94.1
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 3.2e-71 271.9 168 75.6
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 1.6e-70 269.6 126 95.2
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 2.3e-69 265.8 168 71.4
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 3.0e-69 265.4 168 71.4
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 6.7e-69 264.2 167 71.3
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 1.1e-68 263.5 168 70.8
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.5e-68 263.1 168 71.4
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 3.3e-68 261.9 168 70.2
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 70.8
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 69.6
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 5.7e-68 261.2 168 70.2
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 5.7e-68 261.2 168 70.8
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 9.6e-68 260.4 168 69.6
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 2.8e-67 258.8 168 70.8
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.8e-67 258.8 168 70.2
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 6.3e-67 257.7 168 70.8
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 8.2e-67 257.3 168 70.2
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 8.2e-67 257.3 168 70.2
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 8.2e-67 257.3 168 69.0
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 1.1e-66 256.9 168 70.8
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.8e-66 256.1 168 69.0
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.1e-66 255.4 168 70.2
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 5.3e-66 254.6 168 70.2
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 5.3e-66 254.6 168 70.2
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 5.3e-66 254.6 168 70.2
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 9.0e-66 253.8 165 69.7
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 9.0e-66 253.8 168 69.0
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 9.0e-66 253.8 168 69.0
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 68.5
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 2.6e-65 252.3 168 67.9
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 4.5e-65 251.5 168 69.0
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 5.9e-65 251.1 168 66.7
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 7.6e-65 250.8 165 69.1
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 7.6e-65 250.8 168 69.0
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 1.0e-64 250.4 168 66.7
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 1.0e-64 250.4 168 69.6
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 1.7e-64 249.6 168 67.9
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 3.8e-64 248.4 168 66.7
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 5.0e-64 248.1 168 67.9
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 1.1e-63 246.9 175 67.4
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 2.5e-63 245.7 168 67.9
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 2.5e-63 245.7 168 67.9
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 4.2e-63 245.0 168 64.9
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 7.2e-63 244.2 165 69.7
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 9.3e-63 243.8 168 67.3
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 1.6e-62 243.0 167 66.5
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 1.6e-62 243.0 168 64.3
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 2.1e-62 242.7 168 67.3
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 2.1e-62 242.7 167 67.1
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 3.5e-62 241.9 168 66.1
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 4.6e-62 241.5 168 64.9
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 4.6e-62 241.5 168 66.7
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 4.6e-62 241.5 168 65.5
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 6.1e-62 241.1 168 64.3
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 6.1e-62 241.1 165 68.5
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 6.1e-62 241.1 168 66.7
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 7.9e-62 240.7 168 66.7
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.8e-61 239.6 168 63.1
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 1.8e-61 239.6 168 64.9
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 2.3e-61 239.2 165 64.2
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 3.0e-61 238.8 167 64.1
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 3.0e-61 238.8 168 65.5
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.5e-60 236.5 168 64.9
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 1.5e-60 236.5 168 64.9
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 3.3e-60 235.3 168 66.1
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 3.3e-60 235.3 168 66.1
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 5.7e-60 234.6 168 65.5
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.4e-60 234.2 167 62.3
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-59 233.4 167 62.9
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 1.6e-59 233.0 167 62.3
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.6e-59 233.0 168 63.1
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 1.6e-59 233.0 168 63.7
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 3.7e-59 231.9 168 67.3
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 8.2e-59 230.7 190 59.5
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 2.4e-58 229.2 168 63.7
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 2.4e-58 229.2 165 65.5
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 6.9e-58 227.6 160 63.1
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 6.9e-58 227.6 165 63.6
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 4.5e-57 224.9 220 50.9
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 4.5e-57 224.9 168 60.7
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.7e-56 223.0 168 62.5
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.9e-56 222.2 180 57.8
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 1.4e-55 219.9 168 61.3
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 7.2e-55 217.6 168 58.3
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 9.4e-55 217.2 167 60.5
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 3.6e-54 215.3 190 55.8
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 4.6e-54 214.9 190 54.2
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 4.6e-54 214.9 165 60.6
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 7.9e-54 214.2 167 61.1
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 6.7e-53 211.1 204 51.5
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 1.2e-49 200.3 138 66.7
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 7.7e-49 197.6 126 68.3
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 3.8e-48 195.3 131 64.9
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.2e-47 192.2 176 51.7
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 2.7e-46 189.1 167 55.1
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 4.7e-46 188.3 168 53.0
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 7.9e-46 187.6 177 49.7
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 1.0e-45 187.2 183 56.8
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 3.9e-45 185.3 168 53.0
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 4.8e-43 178.3 127 63.0
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 5.3e-42 174.9 116 66.4
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 1.6e-41 173.3 165 52.7
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.5e-41 171.8 168 51.2
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 1.2e-38 163.7 166 49.4
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 2.7e-38 162.5 168 49.4
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 8.0e-38 161.0 179 46.4
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 6.7e-37 157.9 165 50.3
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 1.5e-36 156.8 99 73.7
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 3.3e-36 155.6 169 46.7
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 4.4e-36 155.2 165 49.7
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 7.5e-36 154.5 117 60.7
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.7e-36 154.1 135 53.3
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.3e-35 153.7 134 53.7
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.2e-35 152.9 166 48.8
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 3.7e-35 152.1 156 53.8
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.4e-34 150.2 151 51.7
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.7e-33 146.0 131 52.7
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 5.0e-32 141.7 98 63.3
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 5.0e-32 141.7 98 63.3
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.5e-31 140.2 128 50.8
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 3.4e-28 129.0 98 59.2
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 7.2e-23 111.3 165 37.0
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 1.2e-22 110.5 98 59.2
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.7e-22 109.4 78 61.5
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.6e-22 109.0 165 36.4
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.0e-21 107.5 127 40.9
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 5.2e-21 105.1 111 49.5
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.4e-20 102.4 95 51.6
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 2.7e-17 92.8 75 60.0
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 1.2e-14 84.0 170 32.9
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 2.1e-14 83.2 41 95.1
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 1.4e-13 80.5 40 92.5
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.2e-12 77.4 117 32.5
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.5e-12 77.0 65 53.8
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.5e-12 77.0 65 53.8
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.0e-12 76.6 104 37.5
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.6e-12 76.3 68 51.5
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.5e-12 74.7 60 56.7
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-10 70.5 60 55.0
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.8e-10 70.1 65 50.8
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.1e-10 68.9 65 49.2
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 1.6e-09 67.0 170 30.6
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 5.9e-09 65.1 45 62.2
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 3.3e-07 59.3 74 39.2
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 2.8e-06 56.2 40 62.5


User provided reference genes

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