Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 8.7e-212 740.0 353 100.0
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 8.5e-183 643.7 360 91.1
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 1.2e-173 613.2 359 85.5
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 4.4e-163 578.2 360 81.7
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 1.2e-155 553.5 335 83.0
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 3.7e-146 521.9 361 76.5
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 3.7e-146 521.9 355 76.1
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 4.1e-145 518.5 362 75.7
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 1.0e-143 513.8 363 74.1
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 8.6e-143 510.8 357 74.8
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 8.6e-143 510.8 357 74.8
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 1.5e-142 510.0 364 75.3
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.9e-142 509.6 367 74.1
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 3.1e-140 502.3 363 72.7
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 1.5e-139 500.0 365 74.0
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 1.5e-139 500.0 365 74.0
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 3.2e-129 465.7 363 67.8
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 2.4e-108 396.4 281 70.1
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 6.4e-106 388.3 368 56.5
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 8.4e-106 387.9 362 56.6
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 8.4e-106 387.9 368 56.2
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 5.5e-105 385.2 364 58.5
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 2.7e-104 382.9 291 66.3
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 3.9e-103 379.0 348 58.6
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 2.5e-102 376.3 371 55.5
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 5.6e-102 375.2 315 60.3
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 9.6e-102 374.4 374 54.8
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 2.1e-101 373.2 338 57.7
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 1.1e-100 370.9 261 69.7
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 1.4e-100 370.5 277 65.3
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 1.8e-100 370.2 265 68.7
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.4e-100 369.8 207 80.2
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 3.1e-100 369.4 207 80.2
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.1e-100 369.4 207 80.2
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.1e-100 369.4 207 80.2
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 9.0e-100 367.9 265 66.0
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 3.4e-99 365.9 289 63.3
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 3.4e-99 365.9 324 59.6
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 3.4e-99 365.9 285 62.8
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 4.5e-99 365.5 201 80.6
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 4.5e-99 365.5 245 71.0
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 7.6e-99 364.8 205 79.5
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 7.6e-99 364.8 254 68.5
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 2.2e-98 363.2 205 80.5
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.9e-98 362.8 266 65.8
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 2.9e-98 362.8 341 54.8
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.8e-98 362.5 266 65.8
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 6.5e-98 361.7 205 79.0
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 8.4e-98 361.3 253 67.6
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 8.4e-98 361.3 206 79.1
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 8.4e-98 361.3 285 61.8
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 5.5e-97 358.6 301 60.8
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 9.3e-97 357.8 270 63.7
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 4.6e-96 355.5 295 61.0
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 4.6e-96 355.5 205 78.5
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 6.0e-96 355.1 351 53.0
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 1.0e-95 354.4 205 77.1
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 1.0e-95 354.4 199 79.9
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 1.3e-95 354.0 199 79.9
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 2.3e-95 353.2 307 59.0
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.9e-95 352.4 233 70.8
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 3.9e-95 352.4 273 63.4
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 1.1e-94 350.9 204 77.5
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 1.5e-94 350.5 205 75.6
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 1.5e-94 350.5 209 76.1
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 1.5e-94 350.5 206 76.7
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.9e-94 350.1 205 75.6
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 1.9e-94 350.1 206 77.2
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 4.3e-94 349.0 301 56.8
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 5.7e-94 348.6 204 77.5
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 5.7e-94 348.6 206 76.7
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 9.6e-94 347.8 245 66.9
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 2.1e-93 346.7 206 76.7
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 2.1e-93 346.7 201 79.1
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 2.8e-93 346.3 209 76.1
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 2.8e-93 346.3 298 60.4
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 3.7e-93 345.9 204 77.5
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 3.7e-93 345.9 204 78.4
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 6.3e-93 345.1 232 69.8
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 1.8e-92 343.6 207 74.9
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 2.4e-92 343.2 165 95.2
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.4e-92 343.2 245 66.1
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 2.4e-92 343.2 209 75.6
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 2.4e-92 343.2 206 76.2
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 3.1e-92 342.8 206 75.2
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 4.1e-92 342.4 207 74.4
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 5.3e-92 342.0 206 75.7
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 9.0e-92 341.3 279 60.2
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 9.0e-92 341.3 194 78.4
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 1.2e-91 340.9 205 74.1
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 1.2e-91 340.9 201 77.6
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 2.0e-91 340.1 204 76.5
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 2.0e-91 340.1 295 57.6
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 3.4e-91 339.3 201 77.6
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 5.9e-91 338.6 263 62.7
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 7.6e-91 338.2 272 62.9
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 1.7e-90 337.0 200 75.5
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 1.7e-90 337.0 232 69.0
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.7e-90 337.0 206 74.8
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 5.0e-90 335.5 253 64.4
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 6.5e-90 335.1 293 58.0
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 6.5e-90 335.1 205 74.6
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 1.4e-89 334.0 204 74.5
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 9.3e-89 331.3 201 75.6
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 1.2e-88 330.9 252 63.1
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 1.6e-88 330.5 203 74.4
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 6.1e-88 328.6 299 56.2
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 7.9e-88 328.2 297 57.2
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.5e-86 323.9 204 70.6
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.5e-86 323.2 292 57.2
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 7.4e-86 321.6 249 63.1
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 2.2e-85 320.1 208 70.2
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 8.2e-85 318.2 311 53.7
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.4e-84 317.4 309 53.7
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 1.0e-82 311.2 258 59.3
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.9e-81 307.0 198 67.7
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 9.4e-81 304.7 205 68.3
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 9.7e-78 294.7 206 67.0
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.8e-77 293.1 229 57.2
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 7.2e-73 278.5 200 61.0
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 6.7e-71 271.9 195 61.0
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.5e-70 270.8 162 72.2
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 3.2e-65 253.1 165 73.9
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 4.2e-65 252.7 159 71.1
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 3.0e-63 246.5 151 70.2
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 6.7e-63 245.4 219 56.6
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 1.3e-61 241.1 221 58.4
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 3.7e-61 239.6 144 73.6
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 2.7e-56 223.4 233 46.8
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 5.0e-50 202.6 124 70.2
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 7.5e-46 188.7 148 60.1
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 5.4e-44 182.6 155 56.1
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 1.6e-43 181.0 175 49.1
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.8e-31 141.0 111 55.9
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.3e-23 114.0 83 57.8
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 1.2e-19 101.7 72 69.4
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 8.6e-18 95.5 194 40.7
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.1e-17 95.1 64 73.4
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 3.1e-15 87.0 125 45.6
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 3.4e-14 83.6 46 84.8
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 5.8e-14 82.8 45 88.9
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 3.8e-13 80.1 50 76.0
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 3.9e-10 70.1 92 46.7
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 1.5e-06 58.2 33 69.7
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 7.6e-06 55.8 40 57.5


User provided reference genes

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