Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 0.0e+00 1336.6 991 100.0
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 0.0e+00 1290.0 991 94.5
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 0.0e+00 1243.8 998 93.1
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 0.0e+00 1171.4 1002 90.6
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 0.0e+00 1154.4 1009 87.9
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 0.0e+00 1151.7 1003 90.5
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 0.0e+00 1105.9 1001 86.6
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 0.0e+00 1101.3 1001 85.1
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 0.0e+00 1095.9 1015 84.2
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 0.0e+00 1092.0 994 86.5
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 0.0e+00 1084.7 1010 86.1
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 0.0e+00 1081.2 995 87.1
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1079.7 997 86.8
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1077.8 997 87.2
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 0.0e+00 1076.6 1002 86.7
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 8.9e-262 907.5 1018 71.7
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-235 820.8 924 72.4
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 3.5e-234 815.8 932 72.7
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 6.6e-233 811.6 932 71.4
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.5e-232 810.4 924 72.3
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 9.6e-232 807.7 891 73.4
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.2e-226 790.8 892 71.4
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-226 790.8 892 71.4
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.3e-225 786.6 888 72.1
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 3.0e-225 786.2 892 70.9
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 6.7e-209 731.9 893 69.5
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.3e-207 727.6 1035 63.1
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.1e-206 724.5 1033 63.2
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 3.2e-203 713.0 1027 65.3
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.8e-201 707.2 922 62.8
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 3.9e-201 706.1 915 70.8
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.9e-201 706.1 1018 65.4
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.1e-200 704.5 1018 64.7
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 7.4e-200 701.8 934 65.8
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.3e-199 701.0 1019 57.4
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 2.8e-199 699.9 922 62.6
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.7e-199 699.5 915 69.6
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 1.4e-195 687.6 1028 61.4
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.9e-195 687.2 916 69.5
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 5.5e-195 685.6 1021 59.3
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 3.0e-193 679.9 919 68.4
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.8e-191 673.3 1025 59.8
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.8e-191 673.3 1018 62.3
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.2e-189 667.9 917 67.4
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 7.7e-189 665.2 896 68.3
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.2e-188 663.7 1016 61.5
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 3.8e-188 662.9 1006 60.1
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 8.5e-188 661.8 939 64.4
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 8.5e-188 661.8 943 59.2
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 8.5e-188 661.8 1016 61.5
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 7.2e-187 658.7 1018 52.8
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.2e-186 657.9 1019 56.6
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 4.7e-186 656.0 885 69.3
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.4e-185 654.4 1020 55.7
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.8e-185 654.1 910 67.6
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.5e-184 651.0 1042 60.3
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.5e-184 651.0 999 59.2
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.4e-184 649.4 1006 61.4
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 4.4e-184 649.4 999 62.9
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 4.4e-184 649.4 1006 62.2
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 7.4e-184 648.7 894 67.6
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 9.7e-184 648.3 913 68.0
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.3e-183 647.9 898 61.2
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.7e-183 647.5 829 71.2
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.0e-181 640.6 890 64.8
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 2.6e-181 640.2 910 64.9
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 1.0e-180 638.3 905 64.8
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.0e-180 638.3 995 63.5
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 2.2e-180 637.1 908 66.6
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 2.9e-180 636.7 880 68.3
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 3.8e-180 636.3 914 65.9
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 8.5e-180 635.2 910 64.7
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 8.5e-180 635.2 892 59.1
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 5.5e-179 632.5 1024 60.1
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 7.2e-179 632.1 876 66.1
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.6e-178 630.9 900 66.7
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.7e-178 630.2 887 64.7
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 3.6e-178 629.8 819 71.7
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.4e-177 627.9 1006 56.0
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 1.4e-177 627.9 922 59.7
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 3.0e-177 626.7 866 68.8
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 3.9e-177 626.3 815 66.6
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.4e-176 622.9 918 65.9
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 2.2e-175 620.5 999 57.1
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.8e-175 620.2 914 67.5
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 8.2e-175 618.6 983 52.1
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.0e-173 614.0 890 65.8
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 2.6e-173 613.6 806 70.7
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 3.5e-173 613.2 903 63.9
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 5.9e-173 612.5 882 64.6
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 7.7e-173 612.1 890 65.7
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.0e-172 611.7 876 65.1
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.0e-172 611.7 996 59.4
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 1.3e-172 611.3 813 65.7
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.9e-172 610.1 913 62.4
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 5.0e-172 609.4 773 71.2
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 5.0e-172 609.4 908 65.3
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 5.0e-172 609.4 913 63.4
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 6.5e-172 609.0 839 66.4
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.5e-171 607.8 1019 56.4
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 7.2e-171 605.5 885 63.4
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 1.2e-170 604.7 884 68.3
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.1e-170 604.0 925 63.6
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 3.6e-170 603.2 997 60.9
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.8e-169 600.9 902 57.4
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 6.7e-169 599.0 902 63.9
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 8.8e-169 598.6 880 66.5
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 1.5e-168 597.8 909 62.8
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.5e-168 597.8 998 55.8
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 4.4e-168 596.3 909 60.9
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 7.5e-168 595.5 878 64.6
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 7.5e-168 595.5 996 55.7
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 9.7e-168 595.1 811 67.6
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.8e-166 590.9 867 65.5
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 7.0e-166 589.0 833 64.6
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 3.5e-165 586.6 909 58.6
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 2.2e-164 583.9 905 64.8
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 3.2e-163 580.1 1016 54.7
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 5.5e-163 579.3 878 61.3
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 6.1e-162 575.9 817 67.7
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 1.4e-161 574.7 805 66.2
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 9.8e-160 568.5 1012 57.1
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.7e-159 567.8 775 65.0
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.7e-156 557.8 811 66.1
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 6.6e-156 555.8 858 59.1
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 8.6e-156 555.4 845 57.0
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.1e-155 555.1 811 68.3
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 6.3e-151 539.3 897 50.1
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 6.3e-151 539.3 901 60.6
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 6.6e-148 529.3 943 57.3
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.2e-143 514.2 844 62.6
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.3e-140 505.0 989 50.1
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 6.6e-140 502.7 898 57.3
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.6e-136 490.7 740 60.7
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 1.1e-134 485.3 685 74.9
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 3.2e-134 483.8 924 51.5
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.6e-133 481.5 894 57.5
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.7e-133 480.7 786 59.9
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.7e-130 469.9 684 65.9
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 4.0e-129 466.8 874 57.6
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 2.2e-127 461.1 797 62.7
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.2e-122 445.3 779 47.5
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 4.9e-111 406.8 730 57.8
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.4e-110 405.2 920 48.6
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.6e-109 400.2 856 46.3
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.8e-106 390.2 996 45.0
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 9.9e-104 382.5 800 50.6
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.9e-99 368.2 841 53.9
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.3e-98 365.5 649 70.7
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.2e-94 350.5 677 55.2
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.6e-90 338.6 644 71.9
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.1e-90 338.2 999 42.6
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.4e-89 334.7 905 32.8
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 5.7e-83 313.5 953 46.0
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.5e-80 303.9 396 55.6
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-76 292.4 424 50.0
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 3.0e-76 291.2 542 54.6
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 5.1e-76 290.4 442 48.0
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.2e-74 285.0 747 47.0
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 3.2e-70 271.2 616 58.4
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.4e-68 265.8 646 53.4
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 2.0e-67 261.9 258 64.3
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 1.4e-62 245.7 490 41.8
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.2e-53 216.1 221 52.9
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 6.5e-47 193.7 136 70.6
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 6.3e-42 177.2 323 37.8
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.8e-41 175.6 311 67.2
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.3e-39 169.5 199 51.3
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 1.7e-31 142.5 123 61.8
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.9e-31 141.7 88 79.5
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 5.2e-28 131.0 71 84.5
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 3.4e-27 128.3 119 57.1
BcaC01g01003 Brassica carinata HOM05D003722 ORTHO05D004589 5.8e-19 100.9 150 54.0
C01p05870 Brassica napus HOM05D000903 ORTHO05D000731 2.9e-18 98.6 145 50.3
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 9.2e-17 93.6 230 85.2
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 8.1e-13 80.5 189 32.3
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.6e-11 75.5 64 54.7
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.9e-09 69.3 66 57.6
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 9.6e-06 57.0 169 27.8


User provided reference genes

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