Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-101 372.9 188 100.0
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.2e-100 367.1 188 98.4
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.8e-94 347.1 223 82.5
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.5e-80 301.2 199 80.9
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.5e-80 301.2 199 80.9
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.7e-36 156.8 192 52.1
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.2e-34 150.6 192 50.0
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 1.7e-33 146.7 192 49.0
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 3.3e-32 142.5 192 47.4
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-31 140.6 153 54.9
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.0e-29 133.3 128 63.3
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 2.2e-28 129.8 176 44.9
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 1.1e-27 127.5 192 43.8
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 1.1e-27 127.5 192 43.8
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.9e-27 126.7 193 44.0
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 2.7e-26 122.9 188 43.6
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 2.7e-26 122.9 188 43.6
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 6.0e-26 121.7 231 37.7
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 1.3e-25 120.6 192 41.7
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 5.1e-25 118.6 195 39.5
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 7.3e-24 114.8 233 34.8
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.2e-23 114.0 193 43.0
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 3.6e-23 112.5 210 39.5
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-21 107.1 55 100.0
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-21 107.1 55 100.0
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 3.6e-15 85.9 209 31.6
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 4.8e-15 85.5 193 34.2
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 4.8e-15 85.5 193 32.1
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 8.1e-15 84.7 193 34.2
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 1.8e-14 83.6 193 31.6
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 2.4e-14 83.2 107 42.1
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 5.3e-14 82.0 144 39.6
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 6.9e-14 81.6 144 39.6
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 1.2e-13 80.9 65 61.5
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 1.2e-13 80.9 144 38.9
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.0e-13 80.1 193 32.6
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.0e-13 80.1 193 32.6
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 4.5e-13 79.0 193 32.1
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 4.5e-13 79.0 62 61.3
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 5.8e-13 78.6 62 64.5
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 7.6e-13 78.2 63 63.5
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 7.6e-13 78.2 146 38.4
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 7.6e-13 78.2 66 60.6
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 7.6e-13 78.2 145 33.1
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.3e-12 77.4 158 33.5
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 1.7e-12 77.0 63 63.5
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 2.2e-12 76.6 63 63.5
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 3.8e-12 75.9 63 63.5
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 4.9e-12 75.5 91 50.5
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 4.9e-12 75.5 193 31.1
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 6.4e-12 75.1 63 65.1
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 6.4e-12 75.1 63 63.5
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 8.4e-12 74.7 193 30.1
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.4e-11 73.9 66 54.5
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.9e-11 73.6 63 61.9
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.9e-11 73.6 63 60.3
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.4e-11 73.2 62 62.9
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 3.2e-11 72.8 63 60.3
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 5.4e-11 72.0 63 60.3
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 9.3e-11 71.2 62 61.3
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 1.2e-10 70.9 63 60.3
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.2e-10 70.9 62 58.1
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 1.2e-10 70.9 62 64.5
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.2e-10 70.9 63 54.0
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 1.6e-10 70.5 63 63.5
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 2.1e-10 70.1 63 57.1
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 2.1e-10 70.1 63 57.1
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 2.7e-10 69.7 61 60.7
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 2.7e-10 69.7 63 63.5
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 2.7e-10 69.7 218 28.9
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 3.5e-10 69.3 63 57.1
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 3.5e-10 69.3 62 61.3
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 4.6e-10 68.9 63 55.6
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 6.0e-10 68.6 63 61.9
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 6.0e-10 68.6 62 58.1
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 6.0e-10 68.6 61 59.0
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 7.9e-10 68.2 63 57.1
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.0e-09 67.8 60 60.0
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 1.8e-09 67.0 63 55.6
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 1.8e-09 67.0 61 57.4
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 3.0e-09 66.2 63 55.6
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 3.0e-09 66.2 61 57.4
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 3.9e-09 65.9 63 55.6
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 3.9e-09 65.9 193 30.6
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 5.1e-09 65.5 62 56.5
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 6.7e-09 65.1 85 47.1
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 1.1e-08 64.3 62 54.8
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.1e-08 64.3 62 54.8
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.1e-08 64.3 62 54.8
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.5e-08 63.9 62 56.5
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 1.9e-08 63.5 64 51.6
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 1.9e-08 63.5 61 52.5
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 2.5e-08 63.2 66 56.1
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 3.3e-08 62.8 61 54.1
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 4.3e-08 62.4 63 54.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 7.4e-08 61.6 65 55.4
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 7.4e-08 61.6 63 50.8
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 9.6e-08 61.2 62 53.2
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 1.3e-07 60.8 65 49.2
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 1.3e-07 60.8 63 50.8
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.8e-06 57.0 65 44.6
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.8e-06 57.0 87 40.2


User provided reference genes

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