Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 2071.6 1049 100.0
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1725.3 996 88.8
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1710.3 952 91.8
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1676.4 979 86.9
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1672.5 957 88.7
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1623.6 1010 82.9
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1617.1 980 83.7
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1613.2 1023 81.9
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1607.8 962 84.3
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1607.4 962 84.3
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1599.3 972 83.4
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1592.8 962 83.8
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1592.8 962 83.9
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1561.6 1039 78.2
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1482.2 997 76.2
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1320.4 1047 65.1
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1319.7 993 68.0
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1315.1 1023 64.5
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1301.2 989 65.9
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1300.4 971 67.8
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1299.3 971 67.8
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1298.5 1035 64.0
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1296.6 1005 65.1
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1290.8 971 67.5
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1283.1 1006 63.6
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1279.6 1024 62.5
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1270.0 1070 60.7
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1269.6 983 64.8
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1268.1 1033 62.5
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1266.9 1030 62.8
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1265.8 1002 63.7
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1259.2 1008 62.9
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1256.9 984 64.6
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1255.0 966 65.8
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1253.4 1031 62.6
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1252.7 912 68.4
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1252.7 1019 61.8
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1252.3 1031 61.2
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1240.7 985 63.4
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1238.0 1037 60.9
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1230.7 1020 61.5
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1223.4 973 62.8
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1223.0 1015 60.7
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1214.5 1060 60.0
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1212.2 973 61.6
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1206.8 1031 61.2
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1205.7 984 61.8
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1203.7 973 62.3
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1198.7 1005 60.5
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1194.1 1020 60.4
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1191.8 988 61.2
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1186.0 973 61.4
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1180.6 974 62.0
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1178.3 1061 58.1
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1174.8 1085 56.1
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1174.1 1061 57.7
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1173.7 1060 57.8
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1171.4 981 61.4
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1168.3 982 60.3
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1168.3 1061 57.7
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1167.9 981 61.1
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1167.1 1107 56.0
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1163.3 1061 57.7
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1163.3 1002 58.5
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1162.5 991 59.6
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1161.7 974 61.4
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1159.1 979 60.4
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1155.6 975 59.2
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1154.8 996 59.8
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1153.7 1046 57.1
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1152.5 1006 58.6
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1152.5 1022 58.0
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1152.1 991 61.6
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1150.6 1066 56.1
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1149.8 992 58.8
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1149.0 1000 59.1
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1148.3 991 58.4
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1147.1 1060 57.0
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1140.6 1060 55.7
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1137.1 945 59.9
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1136.7 987 59.3
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1136.3 1059 56.8
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1135.9 1002 58.7
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1131.3 867 65.9
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1129.0 971 58.6
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1127.1 922 61.2
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1111.3 1064 54.8
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1110.9 1043 55.8
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1108.2 1019 57.5
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1106.3 1016 55.4
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1105.5 1038 55.9
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1105.5 970 58.0
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1098.2 1002 55.9
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1098.2 1035 56.2
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1086.2 1043 55.3
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 2.9e-311 1072.0 981 55.5
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 1.1e-310 1070.1 1053 53.4
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 9.3e-310 1067.0 1042 54.8
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 5.1e-308 1061.2 975 55.5
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 6.2e-306 1054.3 865 61.0
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 5.1e-300 1034.6 965 54.6
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 9.6e-283 977.2 973 53.0
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 1.0e-279 967.2 784 61.9
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 2.5e-278 962.6 773 62.6
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 4.2e-278 961.8 951 53.2
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 5.1e-276 954.9 1033 51.4
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 9.4e-270 934.1 677 68.2
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 2.1e-261 906.4 973 48.7
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 6.3e-258 894.8 973 49.5
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 3.3e-251 872.5 783 57.5
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.6e-248 863.6 954 47.8
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 3.4e-243 845.9 991 45.2
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 7.8e-232 808.1 970 44.7
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 1.2e-197 694.5 591 59.1
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.8e-194 682.9 491 68.2
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.8e-194 682.9 491 68.2
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 2.7e-184 650.2 973 38.4
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.7e-170 604.4 532 57.3
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.0e-135 488.8 355 69.6
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.6e-91 342.0 398 48.7
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 4.0e-55 221.1 202 56.4
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 1.9e-52 212.2 580 27.6
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 2.6e-46 191.8 164 61.0
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.0e-45 189.9 143 62.9
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 1.9e-44 185.7 172 59.9
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.6e-35 154.8 177 50.3
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 6.1e-35 154.1 621 23.2
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 3.9e-34 151.4 387 28.9
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.1e-33 149.8 179 46.9
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.4e-26 126.3 116 53.4
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.0e-25 122.5 121 56.2
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 2.6e-22 112.1 150 42.0
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.2e-20 105.1 120 45.0
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 6.8e-18 97.4 97 50.5
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 2.0e-17 95.9 248 27.4
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 7.0e-15 87.4 98 43.9
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 5.5e-12 77.8 74 56.8
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 2.7e-11 75.5 68 57.4
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.4e-10 73.2 302 26.5
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 2.2e-08 65.9 123 37.4
AL7G34390 Arabidopsis lyrata HOM05D005181 ORTHO05D006086 1.2e-06 60.1 69 55.1
BcaNung01768 Brassica carinata HOM05D000123 ORTHO05D009958 4.5e-06 58.2 49 57.1
A01p11480 Brassica napus HOM05D000123 ORTHO05D009958 5.9e-06 57.8 48 56.2
C01p04370 Brassica napus HOM05D000123 ORTHO05D009958 5.9e-06 57.8 51 52.9
BraA01t01095Z Brassica rapa HOM05D000123 ORTHO05D009958 5.9e-06 57.8 48 56.2


User provided reference genes

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