Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 0.0e+00 1180.6 588 100.0
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 0.0e+00 1164.4 588 98.5
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 0.0e+00 1136.3 588 96.1
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 0.0e+00 1131.7 588 95.6
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 0.0e+00 1131.3 588 95.4
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 0.0e+00 1102.0 589 93.7
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 0.0e+00 1101.7 588 92.7
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 0.0e+00 1099.3 588 93.0
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1098.6 588 92.9
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1097.0 589 93.4
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 0.0e+00 1091.6 588 91.8
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1089.7 589 92.9
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1089.7 588 91.8
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 0.0e+00 1089.3 588 91.7
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 8.8e-310 1066.2 589 89.6
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 2.0e-309 1065.1 589 90.5
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 2.0e-301 1038.5 589 89.5
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 3.4e-277 958.0 546 84.1
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 9.9e-277 956.4 568 80.1
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 1.7e-276 955.7 546 83.3
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 2.2e-276 955.3 546 83.5
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 2.9e-276 954.9 559 81.4
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 1.4e-275 952.6 546 83.2
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 2.4e-275 951.8 546 83.0
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 5.4e-275 950.7 590 78.8
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 5.6e-272 940.6 548 83.0
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 4.7e-271 937.6 548 81.9
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 6.2e-271 937.2 547 81.2
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 1.4e-270 936.0 548 81.4
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.8e-270 935.6 548 81.9
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 2.4e-270 935.3 548 81.9
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 4.0e-270 934.5 549 80.9
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 5.2e-270 934.1 546 80.8
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 6.9e-270 933.7 543 81.6
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 6.9e-270 933.7 542 82.3
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 3.4e-269 931.4 588 77.6
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 5.8e-269 930.6 548 81.6
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 7.6e-269 930.2 548 80.7
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 9.9e-269 929.9 545 81.5
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 2.9e-268 928.3 547 80.3
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 1.1e-267 926.4 468 97.0
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 2.4e-267 925.2 546 81.3
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 5.4e-267 924.1 547 80.8
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 1.2e-266 922.9 547 79.9
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 4.6e-266 921.0 549 80.0
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 2.3e-265 918.7 549 80.1
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 3.0e-265 918.3 549 80.1
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 3.9e-265 917.9 588 77.7
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 4.3e-264 914.4 582 76.1
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 5.6e-264 914.1 547 79.7
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 2.1e-263 912.1 590 76.1
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 1.1e-262 909.8 548 80.5
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 1.4e-262 909.4 589 75.2
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 1.8e-262 909.1 548 78.5
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 3.1e-262 908.3 548 78.6
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 1.2e-261 906.4 527 81.8
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 3.4e-261 904.8 575 76.3
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 4.5e-261 904.4 542 80.3
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 9.9e-261 903.3 522 82.2
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 1.3e-260 902.9 548 78.5
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 1.3e-260 902.9 548 78.6
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 2.2e-260 902.1 542 80.3
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 4.9e-260 901.0 588 75.9
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 6.4e-260 900.6 522 82.2
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 8.4e-260 900.2 544 79.4
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 1.9e-259 899.0 525 81.1
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 9.3e-259 896.7 540 78.9
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 1.2e-258 896.3 547 78.1
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 3.5e-258 894.8 522 81.0
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 6.0e-258 894.0 521 81.0
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 1.3e-257 892.9 588 72.8
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 1.8e-257 892.5 542 79.5
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 3.0e-257 891.7 541 78.6
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 3.0e-257 891.7 588 74.1
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 8.7e-257 890.2 547 78.2
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 1.1e-256 889.8 571 76.0
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 1.5e-256 889.4 546 78.0
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 5.6e-256 887.5 590 73.9
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.6e-255 885.9 508 83.3
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 8.1e-255 883.6 570 74.9
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 2.2e-252 875.5 535 78.5
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 2.9e-252 875.2 521 80.6
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 1.4e-251 872.8 655 67.0
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 2.1e-250 869.0 542 77.7
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 4.6e-250 867.8 541 77.3
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 7.9e-250 867.1 541 77.1
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 1.0e-249 866.7 522 79.9
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 1.0e-249 866.7 571 74.4
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 2.3e-249 865.5 544 75.9
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 8.7e-249 863.6 541 76.7
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 7.6e-245 850.5 521 78.7
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 1.9e-243 845.9 542 76.2
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 4.2e-243 844.7 546 74.9
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 1.1e-240 836.6 542 75.1
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 4.8e-239 831.2 501 81.2
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 3.8e-236 821.6 542 74.4
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 5.5e-235 817.8 544 72.8
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 4.3e-232 808.1 465 83.0
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 2.2e-231 805.8 567 68.3
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 2.0e-229 799.3 521 75.6
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 7.7e-229 797.3 468 81.4
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 1.2e-226 790.0 469 80.2
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 7.4e-224 780.8 542 69.2
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 1.4e-219 766.5 443 83.1
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 1.4e-219 766.5 544 69.7
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 7.2e-219 764.2 439 82.7
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 5.3e-214 748.0 468 77.1
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 2.2e-204 716.1 542 64.9
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 1.6e-194 683.3 544 61.2
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 5.0e-188 661.8 464 69.6
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 5.6e-171 605.1 557 55.1
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 3.1e-169 599.4 588 54.8
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 4.4e-168 595.5 527 57.3
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 5.8e-152 542.0 460 57.6
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 1.7e-148 530.4 523 53.0
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 1.6e-138 497.3 332 73.5
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 9.0e-129 464.9 259 84.6
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 2.9e-87 327.0 254 62.2
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 3.6e-77 293.5 158 85.4
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 1.3e-58 231.9 490 31.4
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 2.9e-50 204.1 122 86.1
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 1.4e-36 158.7 208 44.7
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 1.3e-31 142.1 90 75.6
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 3.1e-28 131.0 538 24.0
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 6.9e-20 103.2 65 67.7
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 1.3e-18 99.0 76 63.2
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 5.5e-09 67.0 465 22.2
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 3.0e-07 61.2 372 23.9
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 1.1e-06 59.3 30 86.7


User provided reference genes

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