Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.0e-190 669.8 331 100.0
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 5.0e-185 651.0 331 96.7
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 3.4e-181 638.3 331 94.3
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.6e-178 629.4 330 93.9
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 2.1e-175 619.0 331 92.1
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.3e-174 615.5 330 91.5
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 1.1e-171 606.7 322 92.9
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 5.0e-161 571.2 358 81.6
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 2.3e-153 545.8 325 86.5
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 4.7e-151 538.1 334 79.0
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 5.8e-149 531.2 352 79.3
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 5.8e-149 531.2 352 79.8
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 6.6e-145 517.7 306 86.6
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 2.6e-141 505.8 332 75.6
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.4e-139 500.0 331 74.3
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 5.4e-139 498.0 332 75.3
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.2e-138 496.9 331 74.6
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 2.1e-138 496.1 334 74.6
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 2.1e-138 496.1 334 74.6
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.7e-138 495.7 326 75.2
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 6.0e-138 494.6 327 74.6
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 1.3e-137 493.4 329 73.9
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.8e-134 483.0 334 72.8
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 4.0e-134 481.9 327 73.4
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 6.8e-134 481.1 335 72.2
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 3.8e-132 475.3 319 73.7
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 1.4e-131 473.4 330 69.4
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 3.2e-131 472.2 334 70.1
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 9.3e-131 470.7 337 68.0
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 2.1e-130 469.5 329 70.8
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 4.6e-130 468.4 306 73.9
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 4.6e-130 468.4 324 71.9
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 2.5e-128 462.6 306 72.9
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 4.3e-128 461.8 336 68.2
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 7.3e-128 461.1 326 69.0
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 9.6e-128 460.7 337 66.8
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 9.6e-128 460.7 309 71.8
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 1.3e-127 460.3 306 73.2
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 1.3e-127 460.3 318 69.8
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 2.1e-127 459.5 327 69.7
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 2.1e-127 459.5 317 71.6
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 2.8e-127 459.1 336 68.2
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 3.6e-127 458.8 324 69.1
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 1.4e-126 456.8 334 66.2
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 5.3e-126 454.9 306 70.9
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 6.9e-126 454.5 306 71.2
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.2e-125 453.8 327 69.1
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 1.2e-125 453.8 330 68.5
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 1.5e-125 453.4 352 65.1
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 2.0e-125 453.0 308 72.1
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 3.4e-125 452.2 303 73.6
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 5.8e-125 451.4 339 66.4
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 7.6e-125 451.1 331 68.6
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 9.9e-125 450.7 332 67.8
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 1.3e-124 450.3 332 66.6
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 1.7e-124 449.9 313 71.6
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 4.9e-124 448.4 309 71.8
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 4.9e-124 448.4 331 68.0
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 6.4e-124 448.0 318 70.1
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 8.4e-124 447.6 318 69.5
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 1.1e-123 447.2 313 71.2
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 1.1e-123 447.2 328 67.7
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.9e-123 446.4 331 67.7
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.9e-123 446.4 331 67.4
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 3.2e-123 445.7 331 67.4
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 4.2e-123 445.3 355 63.7
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 1.6e-122 443.4 312 69.6
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 2.1e-122 443.0 317 67.2
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 2.1e-122 443.0 314 67.8
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 2.7e-122 442.6 304 70.1
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 1.7e-121 439.9 330 64.8
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 2.3e-121 439.5 340 63.2
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 3.9e-121 438.7 338 64.8
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 5.1e-121 438.3 357 61.3
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 6.6e-121 438.0 314 66.9
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 1.1e-120 437.2 318 66.7
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.1e-120 437.2 335 66.0
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.1e-120 437.2 314 68.8
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 1.5e-120 436.8 306 70.6
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.9e-120 436.4 332 64.8
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.3e-119 433.7 302 68.5
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 1.6e-119 433.3 312 67.3
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 2.1e-119 433.0 314 68.5
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 2.8e-119 432.6 286 72.7
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 3.6e-119 432.2 314 66.6
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 2.4e-118 429.5 330 65.2
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.6e-117 426.0 279 74.9
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 3.4e-117 425.6 321 64.5
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 1.3e-116 423.7 336 62.8
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 3.8e-116 422.2 322 64.9
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 3.2e-115 419.1 309 65.4
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 1.9e-112 409.8 315 61.6
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 3.3e-112 409.1 310 63.2
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 5.6e-112 408.3 322 63.4
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 8.1e-111 404.4 279 70.3
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 1.1e-110 404.1 293 68.6
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 5.3e-110 401.7 333 61.3
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.2e-109 400.6 330 65.5
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.0e-109 399.8 282 67.7
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.4e-109 399.1 325 59.4
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 2.9e-108 396.0 329 60.8
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 2.9e-108 396.0 347 56.8
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 8.4e-108 394.4 287 65.5
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.1e-107 394.0 315 60.6
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 4.6e-106 388.7 260 72.3
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 4.6e-106 388.7 280 68.9
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 2.3e-105 386.3 301 63.1
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 3.9e-105 385.6 312 59.3
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.5e-104 383.6 318 59.7
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 1.9e-104 383.3 343 60.1
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 5.7e-104 381.7 279 69.5
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.1e-103 379.8 322 58.4
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 6.3e-103 378.3 319 58.3
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 2.4e-102 376.3 319 58.3
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 2.4e-102 376.3 319 58.3
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 6.9e-102 374.8 319 58.0
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.2e-101 374.0 308 59.7
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 2.6e-101 372.9 319 58.6
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 1.7e-100 370.2 319 57.4
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 2.9e-100 369.4 319 57.4
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.1e-99 367.5 308 58.4
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 3.3e-96 355.9 332 58.1
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 1.5e-93 347.1 303 55.8
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 5.5e-91 338.6 281 57.7
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 9.4e-91 337.8 363 49.3
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 9.4e-91 337.8 304 53.0
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 4.6e-90 335.5 232 69.4
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.4e-89 334.0 298 54.4
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 6.7e-89 331.6 329 56.2
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.7e-87 327.0 335 51.3
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 4.8e-87 325.5 251 64.9
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.5e-85 320.5 221 73.8
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 7.7e-85 318.2 301 51.2
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.2e-83 312.8 219 71.7
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 2.1e-82 310.1 308 51.3
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 1.5e-80 303.9 334 46.1
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 2.8e-71 273.1 234 56.4
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 8.5e-68 261.5 318 50.0
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.5e-67 260.8 281 48.8
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.9e-67 260.4 205 65.9
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.4e-64 249.6 164 72.0
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.0e-52 211.5 165 58.8
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.0e-52 211.5 165 58.8
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.5e-51 207.6 140 72.1
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.9e-43 180.6 111 76.6
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 1.2e-40 171.4 324 31.8
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 4.4e-40 169.5 114 70.2
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 4.1e-38 162.9 167 55.7
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 6.6e-36 155.6 312 34.0
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.1e-33 148.3 129 59.7
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 2.3e-33 147.1 301 30.9
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 6.4e-31 139.0 164 47.0
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 2.0e-24 117.5 247 33.6
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 4.1e-22 109.8 170 41.2
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 5.1e-20 102.8 85 56.5
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.2e-16 91.7 282 27.7
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 5.4e-14 82.8 105 43.8


User provided reference genes

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