Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G17200 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.8e-122 442.6 222 100.0
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 1.6e-99 366.3 219 85.8
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 1.5e-92 343.2 230 78.3
CARHR242670 Cardamine hirsuta HOM05D003442 ORTHO05D004005 9.1e-90 334.0 230 75.7
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 2.6e-89 332.4 230 75.7
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 2.9e-88 328.9 252 69.0
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 5.0e-88 328.2 230 74.8
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 5.0e-88 328.2 230 74.8
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 8.5e-88 327.4 230 74.3
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 1.9e-87 326.2 230 74.8
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 1.9e-87 326.2 230 74.8
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 4.7e-86 321.6 230 74.3
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 4.7e-86 321.6 230 74.3
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 6.1e-86 321.2 230 73.9
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.0e-85 320.5 230 72.6
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 1.4e-85 320.1 230 73.9
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 2.3e-85 319.3 230 73.0
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 1.5e-84 316.6 230 73.0
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 2.0e-84 316.2 230 73.0
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 3.7e-83 312.0 221 74.2
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 2.6e-81 305.8 228 70.6
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 1.2e-78 297.0 230 67.0
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 3.6e-78 295.4 230 67.4
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 6.1e-78 294.7 230 65.7
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 1.0e-77 293.9 230 65.2
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.4e-77 293.5 228 67.1
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 6.7e-77 291.2 232 65.5
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 6.7e-77 291.2 230 65.7
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.1e-76 290.4 230 65.2
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.7e-75 286.6 228 66.2
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 4.8e-75 285.0 230 64.3
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 6.3e-75 284.6 238 64.3
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 6.3e-75 284.6 230 64.8
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 8.2e-75 284.3 230 64.8
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 1.4e-74 283.5 230 63.5
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 1.4e-74 283.5 230 63.5
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 1.8e-74 283.1 241 62.2
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 7.0e-74 281.2 230 63.9
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.2e-73 280.4 228 63.2
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 1.2e-73 280.4 230 63.0
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 1.2e-73 280.4 230 62.6
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 2.0e-73 279.6 230 63.0
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 5.9e-73 278.1 252 59.5
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 7.7e-73 277.7 230 63.0
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 7.7e-73 277.7 230 63.9
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 1.0e-72 277.3 229 62.4
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 2.2e-72 276.2 230 63.5
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 2.2e-72 276.2 229 62.4
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 2.2e-72 276.2 230 62.6
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 2.9e-72 275.8 219 67.1
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 2.9e-72 275.8 230 62.6
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 3.8e-72 275.4 230 63.5
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 3.8e-72 275.4 230 62.6
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 5.0e-72 275.0 230 62.6
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 8.5e-72 274.2 215 67.9
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 8.5e-72 274.2 231 61.5
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 1.1e-71 273.9 230 63.0
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 1.5e-71 273.5 230 61.3
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.9e-71 273.1 228 62.7
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 2.5e-71 272.7 215 67.4
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.5e-71 272.7 248 59.3
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 4.2e-71 271.9 229 61.6
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 5.5e-71 271.6 230 63.0
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 5.5e-71 271.6 230 60.9
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 7.2e-71 271.2 226 62.4
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 7.2e-71 271.2 230 62.2
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 7.2e-71 271.2 230 61.7
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 9.4e-71 270.8 230 61.7
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 1.2e-70 270.4 229 62.4
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 1.2e-70 270.4 259 58.3
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 1.2e-70 270.4 230 62.6
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 1.2e-70 270.4 261 56.7
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 1.6e-70 270.0 230 61.3
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 1.6e-70 270.0 230 61.3
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 3.6e-70 268.9 229 60.7
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 4.7e-70 268.5 229 62.4
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 6.1e-70 268.1 230 61.3
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 8.0e-70 267.7 230 62.6
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 2.3e-69 266.2 229 60.7
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 3.0e-69 265.8 229 62.0
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 1.2e-68 263.8 221 62.9
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 2.0e-68 263.1 228 62.3
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 2.0e-68 263.1 230 58.3
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 7.5e-68 261.2 241 57.3
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.3e-67 260.4 254 57.9
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 1.3e-67 260.4 222 61.3
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 1.7e-67 260.0 252 55.2
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.2e-67 259.6 241 58.9
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 3.7e-67 258.8 229 58.5
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 3.7e-67 258.8 230 57.0
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 8.3e-67 257.7 230 57.4
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 1.1e-66 257.3 230 60.0
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 1.1e-66 257.3 234 59.0
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 3.1e-66 255.8 209 63.6
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 3.1e-66 255.8 221 61.5
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 4.1e-66 255.4 232 57.3
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 5.4e-66 255.0 230 63.9
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 1.2e-65 253.8 209 63.6
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 2.7e-65 252.7 231 57.1
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 4.5e-65 251.9 264 53.4
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 4.5e-65 251.9 230 57.0
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 1.7e-64 250.0 230 56.5
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.1e-63 247.3 209 62.7
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 1.5e-63 246.9 230 55.7
Zm00001eb106630 Zea mays HOM05D003442 ORTHO05D004005 2.5e-63 246.1 230 56.5
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 3.2e-63 245.7 226 55.3
Actinidia07920 Actinidia chinensis HOM05D003442 ORTHO05D004005 9.5e-63 244.2 228 59.6
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 2.7e-62 242.7 273 50.5
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 4.7e-62 241.9 256 52.7
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 4.0e-61 238.8 243 55.6
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 4.0e-61 238.8 302 46.4
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 8.8e-61 237.7 231 58.0
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 1.3e-59 233.8 223 57.0
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 8.3e-59 231.1 242 53.3
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 3.1e-58 229.2 247 53.0
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 5.4e-58 228.4 230 54.8
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 2.7e-57 226.1 276 50.4
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 4.5e-57 225.3 237 53.6
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 7.7e-57 224.6 234 52.6
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 1.3e-56 223.8 229 55.0
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 1.7e-56 223.4 242 51.7
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.7e-56 223.4 237 53.2
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 3.8e-56 222.2 230 53.9
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 8.6e-56 221.1 219 57.5
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 8.6e-56 221.1 219 57.5
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 7.3e-55 218.0 207 51.7
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 8.0e-54 214.5 236 50.4
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 1.4e-53 213.8 229 52.0
FAN08G1651 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.3e-53 213.0 146 70.5
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 8.9e-53 211.1 230 50.0
FAN18G0534 Fragaria x ananassa HOM05D003442 ORTHO05D004005 8.9e-53 211.1 146 69.9
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 5.7e-52 208.4 226 50.0
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 7.0e-50 201.4 222 52.7
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 9.2e-50 201.1 224 49.6
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 1.6e-49 200.3 224 52.2
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 2.7e-49 199.5 230 47.8
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 3.0e-48 196.1 224 51.3
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 6.6e-48 194.9 219 50.7
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 3.3e-47 192.6 230 47.4
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 1.2e-46 190.7 220 45.9
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 1.2e-46 190.7 208 51.0
SalBow1G2470 Salvia bowleyana HOM05D003442 ORTHO05D004005 9.8e-44 181.0 110 79.1
SalBow1G3122 Salvia bowleyana HOM05D003442 ORTHO05D004005 9.8e-44 181.0 110 79.1
Cc09_g04240 Coffea canephora HOM05D003442 ORTHO05D004005 1.3e-43 180.6 111 78.4
Sabra13G0073800 Salix brachista HOM05D003442 ORTHO05D004005 2.4e-42 176.4 110 79.1
Psat4g090720 Pisum sativum HOM05D003442 ORTHO05D004005 9.2e-42 174.5 110 76.4
arahy.Tifrunner.gnm1.ann1.T9GKNP Arachis hypogaea HOM05D003442 ORTHO05D004005 1.2e-41 174.1 110 76.4
Phvul.003G250866 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 1.2e-41 174.1 110 76.4
VMungo0251G0407 Vigna mungo HOM05D003442 ORTHO05D004005 2.7e-41 172.9 110 76.4
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 6.0e-41 171.8 230 44.3
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 3.0e-40 169.5 229 47.2
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 4.3e-39 165.6 155 58.7
SGA_v2.0_scaffold340G49317 Striga asiatica HOM05D003442 ORTHO05D004005 5.6e-39 165.2 128 66.4
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 1.1e-37 161.0 179 51.4
TAR365G0520 Trochodendron aralioides HOM05D003442 ORTHO05D004005 1.8e-37 160.2 106 75.5
Os07g0549700 Oryza sativa ssp. japonica HOM05D003442 ORTHO05D004005 2.6e-36 156.4 110 70.0
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 5.1e-32 142.1 211 37.0
Oeu062031.1 Olea europaea HOM05D003442 ORTHO05D004005 3.5e-25 119.4 120 53.3
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 7.8e-25 118.2 198 34.8
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 5.6e-23 112.1 125 49.6
FvH4_5g39390 Fragaria vesca HOM05D003442 ORTHO05D004005 2.8e-22 109.8 74 71.6
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 6.2e-22 108.6 221 34.4
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 1.4e-21 107.5 121 47.1
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 2.0e-20 103.6 120 51.7
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 1.7e-19 100.5 118 44.9
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 4.2e-18 95.9 226 30.5
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 5.4e-18 95.5 240 30.0
Rhsim04G0133200 Rhododendron simsii HOM05D003442 ORTHO05D004005 9.3e-18 94.7 120 45.0
ATR0794G079 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.1e-15 87.8 61 68.9
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 1.1e-15 87.8 119 41.2
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.5e-15 86.7 118 40.7
SHI02588 Sapria himalayana HOM05D000002 ORTHO05D000001 3.6e-14 82.8 118 41.5
SHI02591 Sapria himalayana HOM05D003442 ORTHO05D004005 1.4e-13 80.9 52 75.0
SHI02590 Sapria himalayana HOM05D003442 ORTHO05D004005 4.0e-13 79.3 60 68.3
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.3e-11 74.3 59 57.6
ATR0794G033 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.9e-10 70.5 111 40.5


User provided reference genes

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