Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G17190 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 8.7e-108 393.7 200 100.0
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 6.9e-105 384.0 200 97.0
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 6.9e-105 384.0 200 98.0
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 1.2e-104 383.3 200 97.0
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 1.2e-104 383.3 200 97.0
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 1.2e-104 383.3 200 97.0
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 1.2e-104 383.3 200 97.0
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 7.6e-104 380.6 200 96.5
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 3.8e-103 378.3 200 95.5
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 4.9e-103 377.9 200 95.5
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 4.9e-103 377.9 200 95.5
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 4.9e-103 377.9 200 95.5
CARHR242660 Cardamine hirsuta HOM05D003442 ORTHO05D004005 6.4e-103 377.5 200 96.0
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 1.1e-102 376.7 200 95.5
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 1.1e-102 376.7 200 95.5
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 9.3e-102 373.6 200 95.0
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 3.5e-101 371.7 200 94.0
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 6.0e-101 370.9 221 87.8
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 1.6e-98 362.8 200 92.0
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 4.8e-98 361.3 200 92.0
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 4.8e-98 361.3 200 92.0
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.8e-97 359.4 200 90.0
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 1.9e-94 349.4 200 86.0
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 1.2e-93 346.7 200 85.0
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 1.6e-93 346.3 200 85.0
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 1.6e-93 346.3 200 85.0
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 2.1e-93 345.9 200 87.0
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 3.5e-93 345.1 200 85.5
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 1.0e-92 343.6 200 85.0
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 1.0e-92 343.6 200 85.0
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 1.3e-92 343.2 200 86.0
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 1.3e-92 343.2 200 85.0
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.3e-92 343.2 200 85.0
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.8e-92 342.8 200 85.0
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 1.8e-92 342.8 200 86.0
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 3.0e-92 342.0 200 85.5
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 3.0e-92 342.0 200 84.5
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 5.1e-92 341.3 200 83.0
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 6.7e-92 340.9 200 84.0
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 1.1e-91 340.1 200 84.0
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 1.1e-91 340.1 200 83.5
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 1.1e-91 340.1 200 84.5
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 1.5e-91 339.7 200 84.5
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.5e-91 339.7 200 84.0
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 1.5e-91 339.7 200 85.0
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 1.5e-91 339.7 200 84.0
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.5e-91 339.7 200 86.0
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.9e-91 339.3 200 83.0
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.9e-91 339.3 200 83.0
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 2.5e-91 339.0 200 84.5
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 2.5e-91 339.0 200 82.5
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.5e-91 339.0 200 82.5
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 3.3e-91 338.6 200 84.0
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 3.3e-91 338.6 200 84.0
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 7.4e-91 337.4 200 83.5
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 9.7e-91 337.0 200 83.5
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 9.7e-91 337.0 200 83.5
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 1.3e-90 336.7 200 82.5
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.3e-90 336.7 198 83.8
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 1.3e-90 336.7 200 83.0
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 1.3e-90 336.7 200 83.0
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 1.3e-90 336.7 200 83.5
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 1.3e-90 336.7 200 83.0
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 1.6e-90 336.3 200 84.0
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 2.1e-90 335.9 200 82.5
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 2.8e-90 335.5 200 84.0
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 2.8e-90 335.5 200 84.0
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 3.7e-90 335.1 200 80.5
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 4.8e-90 334.7 200 83.0
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 6.3e-90 334.3 200 82.5
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 6.3e-90 334.3 200 82.5
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 8.2e-90 334.0 200 82.0
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 8.2e-90 334.0 200 81.5
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 8.2e-90 334.0 200 82.0
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 8.2e-90 334.0 200 82.0
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 8.2e-90 334.0 200 83.5
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 1.1e-89 333.6 200 80.5
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 1.4e-89 333.2 198 80.8
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 1.8e-89 332.8 200 83.5
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 2.4e-89 332.4 200 82.5
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 3.1e-89 332.0 200 80.5
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 3.1e-89 332.0 200 81.5
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 4.1e-89 331.6 200 82.0
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 5.3e-89 331.3 196 83.2
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 6.9e-89 330.9 200 82.0
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 9.0e-89 330.5 200 82.5
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 1.2e-88 330.1 200 81.5
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 1.5e-88 329.7 200 82.5
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 1.5e-88 329.7 200 81.5
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 1.5e-88 329.7 200 81.0
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 1.5e-88 329.7 200 81.5
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 1.5e-88 329.7 200 82.0
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 1.5e-88 329.7 200 80.0
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 3.4e-88 328.6 200 80.5
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 4.5e-88 328.2 200 81.0
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 4.5e-88 328.2 200 81.0
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 1.0e-87 327.0 200 79.0
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 1.3e-87 326.6 198 81.8
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 1.7e-87 326.2 200 80.0
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 2.2e-87 325.9 200 82.0
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 2.2e-87 325.9 199 83.4
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 2.2e-87 325.9 200 78.0
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 2.9e-87 325.5 198 81.8
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 2.9e-87 325.5 200 79.0
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 2.9e-87 325.5 200 82.0
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 3.8e-87 325.1 200 82.0
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 3.8e-87 325.1 200 81.5
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 6.5e-87 324.3 200 81.0
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 6.5e-87 324.3 200 81.5
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 6.5e-87 324.3 200 81.5
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 2.5e-86 322.4 200 79.5
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 3.2e-86 322.0 200 79.5
TAR365G0691 Trochodendron aralioides HOM05D003442 ORTHO05D004005 4.2e-86 321.6 200 81.0
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 7.2e-86 320.9 200 77.5
Oeu001224.1 Olea europaea HOM05D003442 ORTHO05D004005 1.2e-85 320.1 200 79.5
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 2.1e-85 319.3 197 79.7
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 6.1e-85 317.8 200 80.0
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 7.9e-85 317.4 197 79.2
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 3.0e-84 315.5 200 83.0
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 3.0e-84 315.5 200 83.0
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 3.9e-84 315.1 200 80.0
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 5.1e-84 314.7 200 75.5
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 6.7e-84 314.3 244 67.6
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.1e-83 313.5 200 79.5
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 1.9e-83 312.8 200 75.5
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 2.5e-83 312.4 189 82.0
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 2.2e-82 309.3 198 78.3
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.0e-80 302.8 196 78.1
CDE02G0117 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 7.7e-80 300.8 184 78.8
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 1.0e-79 300.4 186 80.6
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 1.3e-79 300.1 200 76.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 6.5e-79 297.7 175 83.4
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 2.5e-78 295.8 200 74.5
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 9.4e-78 293.9 198 72.7
Phvul.003G250932 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 9.4e-78 293.9 173 83.2
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 4.6e-77 291.6 195 73.8
arahy.Tifrunner.gnm1.ann1.I4HYIQ Arachis hypogaea HOM05D003442 ORTHO05D004005 8.8e-76 287.3 164 86.0
MSTRG.344 Avicennia marina HOM05D003442 ORTHO05D004005 2.0e-75 286.2 164 85.4
Ciclev10032936m.g Citrus clementina HOM05D003442 ORTHO05D004005 3.3e-75 285.4 164 84.8
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 6.9e-73 277.7 198 68.2
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 2.0e-72 276.2 200 71.5
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 9.4e-70 267.3 200 71.0
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 4.7e-69 265.0 196 66.8
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 6.1e-69 264.6 198 65.2
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 2.3e-68 262.7 175 70.3
CANSAT35G0263 Cannabis sativa HOM05D003442 ORTHO05D004005 3.0e-68 262.3 196 65.8
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 8.8e-68 260.8 200 69.5
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 2.0e-67 259.6 198 63.1
Actinidia07921 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.3e-66 256.9 146 87.0
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 1.7e-66 256.5 196 66.3
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 4.8e-66 255.0 196 62.8
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 6.3e-66 254.6 198 61.6
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 3.2e-62 242.3 200 67.5
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 1.6e-61 240.0 146 80.1
ATR0794G121 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.0e-60 237.3 143 82.5
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 7.2e-46 188.0 202 47.0
MD01G1238200 Malus domestica HOM05D003442 ORTHO05D004005 9.5e-46 187.6 199 55.8
Sed0024694 Sechium edule HOM05D003442 ORTHO05D004005 2.3e-44 183.0 159 65.4
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 3.0e-44 182.6 200 45.5
CDE04G3472 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 1.2e-40 170.6 104 77.9
Lsat_1_v5_gn_2_1040 Lactuca sativa HOM05D003442 ORTHO05D004005 8.6e-39 164.5 141 64.5
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 3.3e-38 162.5 189 43.4
SHI02587 Sapria himalayana HOM05D003442 ORTHO05D004005 1.2e-37 160.6 131 62.6
Ciclev10033985m.g Citrus clementina HOM05D003442 ORTHO05D004005 2.6e-35 152.9 99 80.8
vmacro00759 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 5.8e-35 151.8 90 78.9
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 1.1e-33 147.5 129 55.0
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 2.4e-33 146.4 99 75.8
PGSC0003DMG402011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.0e-31 141.0 84 84.5
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 2.1e-29 133.3 223 36.3
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 7.5e-19 98.2 63 74.6
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 2.7e-16 89.7 82 52.4
SHI02588 Sapria himalayana HOM05D000002 ORTHO05D000001 2.7e-16 89.7 57 75.4
Cfa024478 Carpinus fangiana HOM05D003442 ORTHO05D122614 6.0e-16 88.6 169 33.1
Rhsim04G0133100 Rhododendron simsii HOM05D003442 ORTHO05D339879 2.2e-10 70.1 44 70.5
ATR0794G033 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.6e-08 63.9 43 74.4


User provided reference genes

Program Settings