Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 3.6e-35 151.4 95 100.0
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 1.5e-33 146.0 95 81.1
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 3.7e-32 141.4 95 93.7
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 8.2e-32 140.2 89 94.4
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 9.7e-25 116.7 98 82.7
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.2e-22 109.8 92 83.7
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 2.0e-22 109.0 92 80.4
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 2.7e-22 108.6 93 65.6
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 5.9e-22 107.5 92 81.5
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 1.0e-21 106.7 92 64.1
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 3.8e-21 104.8 92 78.3
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 3.8e-21 104.8 92 79.3
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 3.8e-21 104.8 92 78.3
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 5.0e-21 104.4 92 77.2
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 6.5e-21 104.0 92 79.3
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 6.5e-21 104.0 92 79.3
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 6.5e-21 104.0 93 64.5
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 8.5e-21 103.6 92 60.9
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 8.5e-21 103.6 92 60.9
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 1.1e-20 103.2 92 77.2
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 1.5e-20 102.8 92 66.3
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 1.5e-20 102.8 92 66.3
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 1.5e-20 102.8 92 66.3
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 1.9e-20 102.4 92 76.1
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 5.5e-20 100.9 99 72.7
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 7.2e-20 100.5 92 62.0
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 2.0e-17 92.4 92 75.0
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 2.0e-17 92.4 92 75.0
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 2.0e-17 92.4 92 75.0
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 2.0e-17 92.4 92 75.0
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.4e-17 91.3 98 57.1
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 5.7e-17 90.9 100 59.0
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 7.5e-17 90.5 93 73.1
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.7e-16 88.2 100 56.0
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 6.3e-16 87.4 100 55.0
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.1e-15 86.7 97 51.5
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 1.1e-15 86.7 97 51.5
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.4e-15 86.3 100 55.0
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.8e-15 85.9 97 54.6
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.8e-15 85.9 97 54.6
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.8e-15 85.9 100 55.0
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 5.4e-15 84.3 100 54.0
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 9.1e-15 83.6 96 58.3
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 9.1e-15 83.6 92 56.5
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.2e-14 83.2 100 54.0
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 1.2e-14 83.2 85 56.5
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 1.6e-14 82.8 93 54.8
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 2.0e-14 82.4 89 48.3
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 2.0e-14 82.4 90 48.9
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 3.5e-14 81.6 93 53.8
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 3.5e-14 81.6 89 55.1
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 7.7e-14 80.5 96 52.1
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 1.0e-13 80.1 90 48.9
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 1.0e-13 80.1 92 46.7
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.3e-13 79.7 92 53.3
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.3e-13 79.7 91 52.7
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 1.7e-13 79.3 96 50.0
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.3e-13 79.0 89 50.6
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 2.3e-13 79.0 93 52.7
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 2.9e-13 78.6 99 51.5
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 3.8e-13 78.2 47 78.7
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 3.8e-13 78.2 89 47.2
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 3.8e-13 78.2 93 49.5
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 3.8e-13 78.2 99 51.5
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 5.0e-13 77.8 90 48.9
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 5.0e-13 77.8 90 48.9
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 5.0e-13 77.8 91 49.5
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 5.0e-13 77.8 89 47.2
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 6.5e-13 77.4 94 53.2
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 6.5e-13 77.4 89 48.3
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 6.5e-13 77.4 92 53.3
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 8.6e-13 77.0 89 43.8
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 1.1e-12 76.6 90 48.9
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 1.9e-12 75.9 97 52.6
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.9e-12 75.9 91 49.5
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 2.5e-12 75.5 93 49.5
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 2.5e-12 75.5 85 51.8
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 3.2e-12 75.1 85 48.2
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 3.2e-12 75.1 87 59.8
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 7.2e-12 73.9 90 48.9
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 9.5e-12 73.6 96 45.8
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 1.2e-11 73.2 96 46.9
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.2e-11 73.2 92 47.8
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 1.6e-11 72.8 92 46.7
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 1.6e-11 72.8 90 48.9
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 1.6e-11 72.8 89 46.1
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 2.1e-11 72.4 99 47.5
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.8e-11 72.0 89 47.2
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 2.8e-11 72.0 53 64.2
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 3.6e-11 71.6 99 44.4
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 3.6e-11 71.6 98 48.0
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 4.7e-11 71.2 91 50.5
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 4.7e-11 71.2 90 45.6
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 4.7e-11 71.2 92 46.7
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 4.7e-11 71.2 93 44.1
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 6.1e-11 70.9 94 46.8
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 6.1e-11 70.9 96 45.8
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 6.1e-11 70.9 93 44.1
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 8.0e-11 70.5 98 46.9
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 1.0e-10 70.1 89 47.2
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 1.0e-10 70.1 99 45.5
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 1.4e-10 69.7 91 46.2
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 1.4e-10 69.7 85 42.4
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.4e-10 69.7 89 49.4
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 1.8e-10 69.3 99 44.4
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 3.0e-10 68.6 92 44.6
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 3.0e-10 68.6 92 44.6
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 4.0e-10 68.2 103 48.5
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 4.0e-10 68.2 92 50.0
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 4.0e-10 68.2 92 47.8
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 4.0e-10 68.2 98 45.9
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 5.2e-10 67.8 100 46.0
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 6.8e-10 67.4 89 42.7
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 6.8e-10 67.4 99 43.4
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 6.8e-10 67.4 89 41.6
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 6.8e-10 67.4 91 46.2
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 1.2e-09 66.6 86 46.5
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 1.2e-09 66.6 92 47.8
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 1.2e-09 66.6 99 42.4
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 1.5e-09 66.2 102 48.0
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 1.5e-09 66.2 93 53.8
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 2.0e-09 65.9 89 47.2
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 2.0e-09 65.9 90 48.9
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 2.6e-09 65.5 89 47.2
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 2.6e-09 65.5 97 45.4
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 2.6e-09 65.5 89 43.8
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.4e-09 64.7 46 65.2
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 4.4e-09 64.7 94 40.4
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 5.7e-09 64.3 92 54.3
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 5.7e-09 64.3 99 45.5
TPR.G19065 Trifolium pratense HOM05D003477 ORTHO05D004043 5.7e-09 64.3 51 64.7
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 7.5e-09 63.9 45 57.8
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 7.5e-09 63.9 101 46.5
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 9.8e-09 63.5 44 70.5
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.8e-09 63.5 46 65.2
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 1.7e-08 62.8 44 65.9
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.7e-08 62.8 92 43.5
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 1.7e-08 62.8 97 40.2
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 2.2e-08 62.4 97 44.3
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 2.8e-08 62.0 94 45.7
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 2.8e-08 62.0 89 44.9
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 2.8e-08 62.0 93 45.2
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 3.7e-08 61.6 46 65.2
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.7e-08 61.6 46 65.2
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 3.7e-08 61.6 95 40.0
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 8.3e-08 60.5 38 68.4
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 8.3e-08 60.5 46 65.2
HanXRQChr09g0251061 Helianthus annuus HOM05D003477 ORTHO05D004043 1.4e-07 59.7 99 42.4
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 1.4e-07 59.7 92 48.9
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 1.4e-07 59.7 96 42.7
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 1.8e-07 59.3 90 41.1
BcaNung04987 Brassica carinata HOM05D003477 ORTHO05D004043 1.8e-07 59.3 92 45.7
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 1.8e-07 59.3 88 43.2
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.8e-07 59.3 101 39.6
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 2.4e-07 58.9 95 38.9
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.1e-07 58.5 98 43.9
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.1e-07 58.5 98 43.9
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 3.1e-07 58.5 113 43.4
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 3.1e-07 58.5 91 41.8
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 4.1e-07 58.2 92 42.4
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.1e-07 58.2 90 40.0
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.2e-07 57.0 95 37.9
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 9.2e-07 57.0 95 42.1
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 1.2e-06 56.6 46 58.7
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.2e-06 56.6 92 39.1
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 1.6e-06 56.2 39 66.7
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.0e-06 55.8 92 39.1
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 2.7e-06 55.5 98 42.9
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 2.7e-06 55.5 94 38.3
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 3.5e-06 55.1 95 37.9
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 4.5e-06 54.7 92 40.2
Peaxi162Scf00152g00313 Petunia axillaris HOM05D003477 ORTHO05D004043 5.9e-06 54.3 80 42.5
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 7.8e-06 53.9 39 61.5


User provided reference genes

Program Settings