Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 1.0e-38 162.9 83 100.0
Thhalv10026702m.g Eutrema salsugineum HOM05D006691 ORTHO05D007620 4.5e-34 147.5 83 92.8
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 2.9e-33 144.8 83 86.7
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 5.0e-33 144.1 83 86.7
BcaB03g11823 Brassica carinata HOM05D006691 ORTHO05D007620 3.9e-30 134.4 83 83.1
BcaNung04921 Brassica carinata HOM05D006691 ORTHO05D007620 8.8e-30 133.3 83 81.9
BcaNung00683 Brassica carinata HOM05D006691 ORTHO05D007620 2.2e-28 128.6 83 81.9
C01p04190 Brassica napus HOM05D006691 ORTHO05D007620 2.2e-28 128.6 83 81.9
A01p03880 Brassica napus HOM05D006691 ORTHO05D007620 2.8e-28 128.3 83 81.9
BcaC01g00889 Brassica carinata HOM05D006691 ORTHO05D007620 4.8e-28 127.5 83 81.9
A03p63030 Brassica napus HOM05D006691 ORTHO05D007620 4.8e-28 127.5 83 78.3
BraA01t00375Z Brassica rapa HOM05D006691 ORTHO05D007620 4.8e-28 127.5 83 80.7
BraA03t15377Z Brassica rapa HOM05D006691 ORTHO05D007620 4.8e-28 127.5 83 78.3
BraA08t33636Z Brassica rapa HOM05D006691 ORTHO05D007620 1.4e-27 125.9 83 80.7
C07p60660 Brassica napus HOM05D006691 ORTHO05D007620 3.1e-27 124.8 83 75.9
BolC7t46496H Brassica oleracea HOM05D006691 ORTHO05D007620 3.1e-27 124.8 83 75.9
BolC3t20851H Brassica oleracea HOM05D006691 ORTHO05D007620 4.5e-26 120.9 85 75.3
Sp7g32390 Schrenkiella parvula HOM05D006691 ORTHO05D007620 4.4e-21 104.4 62 82.3
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 9.7e-21 103.2 84 60.7
BolC1t00407H Brassica oleracea HOM05D006691 ORTHO05D007620 1.3e-20 102.8 87 69.0
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 2.2e-20 102.1 84 61.9
Carub.0003s3015 Capsella rubella HOM05D006691 ORTHO05D007620 1.8e-19 99.0 85 62.4
C03p85630 Brassica napus HOM05D006691 ORTHO05D007620 2.9e-17 91.7 55 81.8
A08p16710 Brassica napus HOM05D006691 ORTHO05D007620 3.2e-16 88.2 72 66.7
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 1.4e-14 82.8 85 55.3
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 4.4e-13 77.8 94 48.9
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 9.8e-13 76.6 84 51.2
AT4G34600 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 2.2e-12 75.5 45 93.3
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 2.2e-12 75.5 86 52.3
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 1.8e-11 72.4 97 45.4
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 1.8e-11 72.4 85 50.6
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 2.4e-11 72.0 85 50.6
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 3.1e-11 71.6 94 46.8
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 3.1e-11 71.6 92 47.8
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 5.4e-11 70.9 91 45.1
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 7.0e-11 70.5 94 48.9
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 7.0e-11 70.5 88 47.7
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 7.0e-11 70.5 90 46.7
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 4.5e-10 67.8 81 48.1
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 5.9e-10 67.4 96 43.8
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 1.0e-09 66.6 92 44.6
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 3.8e-09 64.7 83 45.8
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 5.0e-09 64.3 81 46.9
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 5.0e-09 64.3 91 42.9
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 6.5e-09 63.9 87 46.0
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 8.5e-09 63.5 91 45.1
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 8.5e-09 63.5 97 43.3
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 1.1e-08 63.2 93 45.2
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 1.5e-08 62.8 87 42.5
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 1.5e-08 62.8 94 40.4
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 1.9e-08 62.4 88 43.2
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 2.5e-08 62.0 94 43.6
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 2.5e-08 62.0 85 42.4
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 2.5e-08 62.0 91 42.9
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 3.2e-08 61.6 90 38.9
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 3.2e-08 61.6 90 40.0
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 4.2e-08 61.2 84 40.5
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 4.2e-08 61.2 86 44.2
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 5.5e-08 60.8 93 41.9
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 5.5e-08 60.8 96 45.8
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 5.5e-08 60.8 96 45.8
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 5.5e-08 60.8 90 43.3
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 5.5e-08 60.8 87 46.0
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 5.5e-08 60.8 88 44.3
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 5.5e-08 60.8 93 40.9
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 1.2e-07 59.7 94 41.5
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 1.2e-07 59.7 92 44.6
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 1.6e-07 59.3 86 41.9
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 2.1e-07 58.9 81 40.7
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 2.7e-07 58.5 81 40.7
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 2.7e-07 58.5 81 40.7
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 3.6e-07 58.2 93 40.9
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 4.7e-07 57.8 81 44.4
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 4.7e-07 57.8 80 42.5
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 4.7e-07 57.8 80 42.5
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 6.1e-07 57.4 88 40.9
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 6.1e-07 57.4 96 44.8
PGR042G3893 Punica granatum HOM05D006691 ORTHO05D007620 6.1e-07 57.4 80 45.0
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 8.0e-07 57.0 93 40.9
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 1.4e-06 56.2 93 38.7
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.4e-06 56.2 96 42.7
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.4e-06 56.2 96 42.7
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 2.3e-06 55.5 80 41.2
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 2.3e-06 55.5 94 36.2
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 2.3e-06 55.5 101 38.6
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 3.0e-06 55.1 96 39.6
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 4.0e-06 54.7 35 65.7
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 4.0e-06 54.7 97 38.1
Aqoxy5G01556 Aquilegia oxysepala HOM05D006691 ORTHO05D007620 5.2e-06 54.3 89 37.1


User provided reference genes

Program Settings