Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G16570 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 1.3e-106 389.8 211 100.0
Sp7g32420 Schrenkiella parvula HOM05D007387 ORTHO05D009321 6.0e-75 284.6 213 70.0
AT4G34630 Arabidopsis thaliana HOM05D007387 ORTHO05D009321 8.4e-69 264.2 212 77.8
Carub.0007s0565 Capsella rubella HOM05D007387 ORTHO05D009321 1.6e-67 260.0 218 69.7
A01p03860 Brassica napus HOM05D007387 ORTHO05D009321 3.1e-63 245.7 234 62.4
BraA01t00373Z Brassica rapa HOM05D007387 ORTHO05D009321 2.9e-61 239.2 221 65.2
Thhalv10026183m.g Eutrema salsugineum HOM05D007387 ORTHO05D009321 2.4e-60 236.1 225 64.4
CARHR242940 Cardamine hirsuta HOM05D007387 ORTHO05D009321 9.3e-60 234.2 223 65.9
BcaNung04919 Brassica carinata HOM05D007387 ORTHO05D009321 1.8e-58 229.9 224 61.6
BcaNung00681 Brassica carinata HOM05D007387 ORTHO05D009321 2.3e-58 229.6 222 64.9
BcaNung04916 Brassica carinata HOM05D007387 ORTHO05D009321 6.7e-58 228.0 224 61.2
C01p04170 Brassica napus HOM05D007387 ORTHO05D009321 6.7e-58 228.0 222 64.4
BolC1t00405H Brassica oleracea HOM05D007387 ORTHO05D009321 6.7e-58 228.0 222 64.4
Aa31LG2G15890 Aethionema arabicum HOM05D007387 ORTHO05D009321 1.6e-48 196.8 218 53.2
THA.LOC104807296 Tarenaya hassleriana HOM05D007387 ORTHO05D009321 3.0e-34 149.4 224 46.9
Cpa.g.sc139.28 Carica papaya HOM05D007387 ORTHO05D009321 1.8e-18 97.1 212 39.2
Ciclev10029309m.g Citrus clementina HOM05D007387 ORTHO05D009321 4.8e-16 89.0 225 34.7
Atru.chr5.3107 Acer truncatum HOM05D007387 ORTHO05D009321 3.1e-15 86.3 64 65.6
Duzib132G0100 Durio zibethinus HOM05D007387 ORTHO05D009321 7.0e-15 85.1 195 37.9
AL3G52630 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 1.2e-14 84.3 103 48.5
Duzib248G1112 Durio zibethinus HOM05D007387 ORTHO05D009321 2.0e-14 83.6 191 35.6
Thecc.02G078400 Theobroma cacao HOM05D007387 ORTHO05D009321 2.0e-14 83.6 188 37.2
Sabra04G0107500 Salix brachista HOM05D007387 ORTHO05D009321 1.0e-13 81.3 214 36.9
FAN24G0663 Fragaria x ananassa HOM05D007387 ORTHO05D009321 2.2e-13 80.1 73 61.6
Gorai.012G154600 Gossypium raimondii HOM05D007387 ORTHO05D009321 2.2e-13 80.1 80 57.5
FAN15G3112 Fragaria x ananassa HOM05D007387 ORTHO05D009321 3.8e-13 79.3 73 60.3
FAN27G1365 Fragaria x ananassa HOM05D007387 ORTHO05D009321 3.8e-13 79.3 73 60.3
Gohir.D04G166200 Gossypium hirsutum HOM05D007387 ORTHO05D009321 5.0e-13 79.0 73 57.5
FvH4_2g10040 Fragaria vesca HOM05D007387 ORTHO05D009321 6.5e-13 78.6 73 60.3
QL11p045571 Quercus lobata HOM05D007387 ORTHO05D009321 6.5e-13 78.6 60 65.0
Cfa005072 Carpinus fangiana HOM05D007387 ORTHO05D009321 1.1e-12 77.8 65 63.1
CsaV3_7G000220 Cucumis sativus L. HOM05D007387 ORTHO05D009321 1.5e-12 77.4 84 57.1
VMungo1127G0459 Vigna mungo HOM05D007387 ORTHO05D009321 1.5e-12 77.4 58 65.5
MELO3C013435.2 Cucumis melo HOM05D007387 ORTHO05D009321 1.9e-12 77.0 84 56.0
Glyma.12G039000 Glycine max HOM05D007387 ORTHO05D009321 1.9e-12 77.0 58 65.5
Potri.009G121700 Populus trichocarpa HOM05D007387 ORTHO05D009321 1.9e-12 77.0 211 36.5
Gohir.A04G124100 Gossypium hirsutum HOM05D007387 ORTHO05D009321 2.5e-12 76.6 73 56.2
TWI79G0383 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 3.2e-12 76.3 216 33.3
CARHR106690 Cardamine hirsuta HOM05D007387 ORTHO05D009321 5.5e-12 75.5 156 41.7
Sed0010335 Sechium edule HOM05D007387 ORTHO05D009321 5.5e-12 75.5 58 65.5
ClCG02G004690 Citrullus lanatus HOM05D007387 ORTHO05D009321 7.2e-12 75.1 84 52.4
Manes.11G087600 Manihot esculenta HOM05D007387 ORTHO05D009321 1.2e-11 74.3 207 32.9
Phvul.011G041100 Phaseolus vulgaris HOM05D007387 ORTHO05D009321 1.2e-11 74.3 75 56.0
Sabra09G0094000 Salix brachista HOM05D007387 ORTHO05D009321 1.2e-11 74.3 203 32.5
Gohir.A12G041900 Gossypium hirsutum HOM05D007387 ORTHO05D009321 1.6e-11 73.9 74 58.1
Gohir.D12G030300 Gossypium hirsutum HOM05D007387 ORTHO05D009321 1.6e-11 73.9 69 59.4
Sed0000236 Sechium edule HOM05D007387 ORTHO05D009321 1.6e-11 73.9 57 66.7
Dinv42018 Davidia involucrata HOM05D007387 ORTHO05D009321 2.1e-11 73.6 62 58.1
MD10G1066200 Malus domestica HOM05D007387 ORTHO05D009321 2.1e-11 73.6 60 65.0
TWI31G1242 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 2.1e-11 73.6 212 31.1
Glyma.11G113100 Glycine max HOM05D007387 ORTHO05D009321 2.7e-11 73.2 58 63.8
Carub.0003s3021 Capsella rubella HOM05D007387 ORTHO05D009321 4.7e-11 72.4 159 39.6
Actinidia00563 Actinidia chinensis HOM05D001785 ORTHO05D001933 1.0e-10 71.2 57 59.6
CANSAT11G0211 Cannabis sativa HOM05D007387 ORTHO05D009321 1.0e-10 71.2 62 61.3
vmacro02067 Vaccinium macrocarpon HOM05D007387 ORTHO05D009321 1.0e-10 71.2 58 58.6
Prupe.8G088200 Prunus persica HOM05D007387 ORTHO05D009321 1.4e-10 70.9 58 63.8
arahy.Tifrunner.gnm1.ann1.WH0Y0U Arachis hypogaea HOM05D007387 ORTHO05D009321 1.8e-10 70.5 58 60.3
Potri.004G160700 Populus trichocarpa HOM05D007387 ORTHO05D009321 1.8e-10 70.5 58 60.3
CiPaw.06G131100 Carya illinoinensis HOM05D007387 ORTHO05D009321 2.3e-10 70.1 56 62.5
Psat7g182600 Pisum sativum HOM05D007387 ORTHO05D009321 2.3e-10 70.1 56 58.9
Lj3g0012874 Lotus japonicus HOM05D007387 ORTHO05D009321 4.0e-10 69.3 57 61.4
MD05G1058600 Malus domestica HOM05D007387 ORTHO05D009321 4.0e-10 69.3 58 60.3
RcHm_v2.0_Chr6g0266971 Rosa chinensis HOM05D007387 ORTHO05D009321 4.0e-10 69.3 58 60.3
Lalb_Chr19g0138881 Lupinus albus HOM05D007387 ORTHO05D009321 5.2e-10 68.9 56 60.7
ECA236G2541 Erigeron canadensis HOM05D007387 ORTHO05D009321 1.5e-09 67.4 90 47.8
Lalb_Chr03g0025431 Lupinus albus HOM05D007387 ORTHO05D009321 2.0e-09 67.0 58 56.9
Medtr4g071120 Medicago truncatula HOM05D007387 ORTHO05D009321 2.0e-09 67.0 56 58.9
Solyc01g110150.2 Solanum lycopersicum HOM05D007387 ORTHO05D009321 2.0e-09 67.0 58 58.6
HanXRQChr04g0127721 Helianthus annuus HOM05D007387 ORTHO05D009321 2.6e-09 66.6 222 30.2
PGR142G2532 Punica granatum HOM05D007387 ORTHO05D009321 2.6e-09 66.6 80 50.0
Ca_20916_v3 Cicer arietinum L. HOM05D007387 ORTHO05D009321 3.4e-09 66.2 82 50.0
Eucgr.I01309 Eucalyptus grandis HOM05D007387 ORTHO05D009321 7.5e-09 65.1 56 57.1
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 7.5e-09 65.1 226 30.5
TWI75G1034 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 9.8e-09 64.7 92 41.3
Actinidia11742 Actinidia chinensis HOM05D007387 ORTHO05D009321 1.3e-08 64.3 141 34.8
DCAR_009554 Daucus carota HOM05D007387 ORTHO05D009321 2.8e-08 63.2 56 55.4
PGSC0003DMG400030970 Solanum tuberosum HOM05D007387 ORTHO05D009321 2.8e-08 63.2 90 44.4
DCAR_003650 Daucus carota HOM05D007387 ORTHO05D009321 3.7e-08 62.8 56 53.6
TPR.G30501 Trifolium pratense HOM05D000711 ORTHO05D000545 4.8e-08 62.4 79 45.6
Sc18g0005240 Simmondsia chinensis HOM05D007387 ORTHO05D009321 1.1e-07 61.2 56 57.1
Sopen01g052310 Solanum pennellii HOM05D007387 ORTHO05D009321 1.1e-07 61.2 56 55.4
Lsat_1_v5_gn_7_91901 Lactuca sativa HOM05D007387 ORTHO05D009321 1.4e-07 60.8 198 32.8
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.4e-07 60.1 205 31.7
Oeu055620.1 Olea europaea HOM05D007387 ORTHO05D009321 2.4e-07 60.1 69 46.4
Oeu008575.1 Olea europaea HOM05D007387 ORTHO05D009321 4.1e-07 59.3 65 46.2
Actinidia12738 Actinidia chinensis HOM05D007387 ORTHO05D009321 5.4e-07 58.9 75 48.0
Actinidia27864 Actinidia chinensis HOM05D007387 ORTHO05D009321 5.4e-07 58.9 75 48.0
Cc02_g17100 Coffea canephora HOM05D007387 ORTHO05D009321 9.1e-07 58.2 86 41.9
AL8G21250 Arabidopsis lyrata HOM05D062766 ORTHO05D038584 1.2e-06 57.8 137 42.3
AT5G48420 Arabidopsis thaliana HOM05D062766 ORTHO05D038584 2.0e-06 57.0 112 42.9
Peaxi162Scf00003g00073 Petunia axillaris HOM05D007387 ORTHO05D009321 5.9e-06 55.5 69 43.5
CAN.G170.83 Capsicum annuum HOM05D007387 ORTHO05D009321 7.7e-06 55.1 215 27.9


User provided reference genes

Program Settings