Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.5e-77 292.7 148 100.0
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 2.9e-76 288.5 148 98.0
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 4.4e-72 274.6 148 94.6
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.8e-71 271.9 148 93.9
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.4e-69 265.0 148 91.2
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.0e-65 251.9 153 86.9
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 2.2e-63 245.7 152 81.6
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 1.8e-57 226.1 148 79.1
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 1.8e-57 226.1 148 79.1
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 5.7e-56 221.1 148 79.1
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 4.8e-55 218.0 148 77.7
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 6.3e-55 217.6 148 77.7
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 8.0e-50 200.7 148 70.9
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.0e-44 183.7 149 68.5
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 2.8e-39 165.6 145 66.2
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.4e-38 163.3 148 65.5
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 3.5e-37 158.7 144 64.6
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 4.5e-37 158.3 146 63.7
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 1.0e-36 157.1 144 63.9
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 1.0e-36 157.1 144 63.9
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 1.0e-36 157.1 144 63.9
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 8.6e-36 154.1 144 62.5
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.1e-35 153.7 144 63.9
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.9e-35 152.9 145 64.1
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.6e-34 148.7 142 59.9
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 5.2e-33 144.8 150 53.3
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 5.2e-33 144.8 150 53.3
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 3.4e-32 142.1 143 61.5
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 5.8e-32 141.4 143 53.8
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 9.8e-32 140.6 145 53.8
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.7e-31 139.8 146 51.4
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.9e-31 139.0 150 52.7
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 8.3e-31 137.5 137 51.8
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.1e-30 137.1 146 50.0
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.1e-30 137.1 145 51.0
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.4e-30 136.7 158 48.7
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 4.1e-30 135.2 132 56.1
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 4.1e-30 135.2 132 53.8
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 4.1e-30 135.2 145 48.3
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 5.4e-30 134.8 150 48.7
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 5.4e-30 134.8 146 49.3
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.2e-29 133.7 148 52.7
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.6e-29 133.3 133 53.4
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.6e-29 133.3 143 52.4
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.6e-29 133.3 143 52.4
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 2.0e-29 132.9 145 51.0
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 2.0e-29 132.9 126 58.7
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.7e-29 132.5 133 54.1
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 6.0e-29 131.3 146 50.0
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 6.0e-29 131.3 146 49.3
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 6.0e-29 131.3 143 51.0
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 7.8e-29 131.0 147 51.0
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.3e-28 130.2 133 52.6
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 1.7e-28 129.8 146 48.6
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 3.0e-28 129.0 151 47.0
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 3.0e-28 129.0 147 51.0
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 3.0e-28 129.0 147 46.9
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 3.9e-28 128.6 142 48.6
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 3.9e-28 128.6 130 53.1
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 5.0e-28 128.3 150 48.0
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 6.6e-28 127.9 134 53.0
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 8.6e-28 127.5 131 50.4
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 1.5e-27 126.7 155 47.1
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 2.5e-27 125.9 131 54.2
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 3.3e-27 125.6 146 47.9
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 5.6e-27 124.8 134 49.3
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 7.3e-27 124.4 134 51.5
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 7.3e-27 124.4 131 53.4
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 9.5e-27 124.0 146 50.0
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 9.5e-27 124.0 129 46.5
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 2.1e-26 122.9 145 49.0
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 2.1e-26 122.9 128 48.4
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.6e-26 122.1 152 46.7
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 4.7e-26 121.7 143 46.2
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.7e-26 121.7 147 47.6
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 2.3e-25 119.4 150 44.0
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 3.1e-25 119.0 123 50.4
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 5.2e-25 118.2 144 46.5
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 5.2e-25 118.2 128 46.9
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.2e-24 117.1 142 45.1
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.5e-24 116.7 145 46.2
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.5e-24 116.7 135 45.9
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.4e-24 115.2 152 44.7
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 5.8e-24 114.8 138 45.7
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 7.5e-24 114.4 153 44.4
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 9.8e-24 114.0 132 48.5
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 9.8e-24 114.0 147 44.9
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 9.8e-24 114.0 148 39.9
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 2.2e-23 112.8 135 45.2
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 2.9e-23 112.5 149 42.3
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 2.9e-23 112.5 135 45.2
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.1e-22 110.5 128 45.3
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 5.4e-22 108.2 164 39.6
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 7.0e-22 107.8 148 40.5
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.2e-21 107.1 139 46.8
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.2e-21 107.1 148 43.2
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.6e-21 106.7 103 54.4
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 2.1e-21 106.3 146 45.2
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 3.5e-21 105.5 144 38.2
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 4.6e-21 105.1 139 43.2
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 6.0e-21 104.8 119 44.5
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 7.8e-21 104.4 130 43.1
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 1.0e-20 104.0 130 44.6
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.0e-20 104.0 134 43.3
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.3e-20 103.6 79 53.2
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.3e-20 103.6 130 44.6
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 1.3e-20 103.6 134 43.3
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.7e-20 103.2 148 41.2
BcaNung02389 Brassica carinata HOM05D005114 ORTHO05D021810 1.1e-19 100.5 91 64.8
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.1e-19 100.5 147 39.5
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 1.5e-19 100.1 167 35.9
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 2.5e-19 99.4 167 35.9
C07p61110 Brassica napus HOM05D005114 ORTHO05D021810 3.3e-19 99.0 91 63.7
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 5.6e-19 98.2 136 43.4
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 6.2e-18 94.7 127 44.9
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 6.2e-18 94.7 130 42.3
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 8.1e-18 94.4 79 53.2
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 2.3e-17 92.8 139 41.0
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 2.3e-17 92.8 131 42.0
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 2.3e-17 92.8 113 43.4
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 5.2e-17 91.7 86 57.0
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 5.2e-17 91.7 146 38.4
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 6.8e-17 91.3 72 45.8
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.2e-16 90.5 107 47.7
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 4.4e-16 88.6 105 42.9
BcaNung06456 Brassica carinata HOM05D005114 ORTHO05D021810 5.8e-16 88.2 90 60.0
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 7.5e-16 87.8 122 40.2
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 8.3e-15 84.3 126 42.9
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 3.2e-14 82.4 113 38.1
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 9.2e-14 80.9 130 38.5
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 1.6e-13 80.1 129 40.3
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 6.0e-13 78.2 132 38.6
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 7.8e-13 77.8 80 45.0
Aa31LG8G14660 Aethionema arabicum HOM05D005114 ORTHO05D006301 5.1e-12 75.1 145 44.8
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 2.8e-10 69.3 53 52.8
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.8e-10 69.3 142 34.5
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.1e-09 67.4 138 31.2
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.8e-09 66.6 107 40.2
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 7.6e-08 61.2 120 39.2
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 4.9e-07 58.5 138 29.7
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 4.9e-07 58.5 144 33.3
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 7.1e-06 54.7 54 42.6


User provided reference genes

Program Settings