Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G14940 Arabidopsis lyrata HOM05D003695 ORTHO05D038627 1.6e-43 179.1 94 100.0
Eucgr.G01854 Eucalyptus grandis HOM05D003695 ORTHO05D004788 3.0e-18 95.1 73 71.2
Gohir.A12G033600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 3.0e-18 95.1 73 71.2
Gorai.008G040800 Gossypium raimondii HOM05D003695 ORTHO05D004788 3.0e-18 95.1 73 71.2
PGR142G4002 Punica granatum HOM05D003695 ORTHO05D004788 3.0e-18 95.1 73 71.2
Aa31LG8G15160 Aethionema arabicum HOM05D003695 ORTHO05D004788 3.9e-18 94.7 73 71.2
Thecc.02G045500 Theobroma cacao HOM05D003695 ORTHO05D004788 5.1e-18 94.4 90 61.1
Gohir.D12G038900 Gossypium hirsutum HOM05D003695 ORTHO05D004788 6.7e-18 94.0 73 69.9
Carub.0003s3212 Capsella rubella HOM05D003695 ORTHO05D004788 8.7e-18 93.6 73 69.9
Duzib052G0095 Durio zibethinus HOM05D003695 ORTHO05D004788 8.7e-18 93.6 73 69.9
Ciclev10028035m.g Citrus clementina HOM05D003695 ORTHO05D004788 1.5e-17 92.8 73 69.9
Duzib132G1261 Durio zibethinus HOM05D003695 ORTHO05D004788 1.5e-17 92.8 73 68.5
THA.LOC104819511 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 1.5e-17 92.8 73 69.9
CARHR108470 Cardamine hirsuta HOM05D003695 ORTHO05D004788 1.9e-17 92.4 73 68.5
Dinv41883 Davidia involucrata HOM05D003695 ORTHO05D004788 1.9e-17 92.4 73 69.9
TWI31G0731 Tripterygium wilfordii HOM05D003695 ORTHO05D004788 1.9e-17 92.4 73 68.5
BcaB08g34780 Brassica carinata HOM05D003695 ORTHO05D004788 2.5e-17 92.0 75 68.0
A06p33480 Brassica napus HOM05D003695 ORTHO05D004788 2.5e-17 92.0 75 68.0
C03p58880 Brassica napus HOM05D003695 ORTHO05D004788 2.5e-17 92.0 75 68.0
CSS0032013 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 2.5e-17 92.0 91 59.3
AL3G51020 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 3.3e-17 91.7 73 68.5
AT2G17980 Arabidopsis thaliana HOM05D003695 ORTHO05D004788 3.3e-17 91.7 73 69.9
Potri.009G165300 Populus trichocarpa HOM05D003695 ORTHO05D004788 4.3e-17 91.3 75 66.7
CSS0026215 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 5.7e-17 90.9 91 58.2
MD05G1133700 Malus domestica HOM05D003695 ORTHO05D004788 5.7e-17 90.9 90 58.9
MD10G1138700 Malus domestica HOM05D003695 ORTHO05D004788 5.7e-17 90.9 90 58.9
Prupe.8G177500 Prunus persica HOM05D003695 ORTHO05D004788 5.7e-17 90.9 90 58.9
Sabra09G0129300 Salix brachista HOM05D003695 ORTHO05D004788 5.7e-17 90.9 73 68.5
GSVIVG01023951001 Vitis vinifera HOM05D003695 ORTHO05D004788 5.7e-17 90.9 73 67.1
Atru.chr9.531 Acer truncatum HOM05D003695 ORTHO05D004788 7.4e-17 90.5 73 68.5
Dinv14161 Davidia involucrata HOM05D003695 ORTHO05D004788 7.4e-17 90.5 73 68.5
Manes.02G063200 Manihot esculenta HOM05D003695 ORTHO05D004788 7.4e-17 90.5 73 68.5
Manes.02G064001 Manihot esculenta HOM05D003695 ORTHO05D004788 7.4e-17 90.5 73 68.5
Nitab4.5_0000783g0140 Nicotiana tabacum HOM05D003695 ORTHO05D004788 7.4e-17 90.5 72 66.7
Nitab4.5_0011212g0010 Nicotiana tabacum HOM05D003695 ORTHO05D004788 7.4e-17 90.5 72 66.7
Peaxi162Scf00362g00220 Petunia axillaris HOM05D003695 ORTHO05D004788 7.4e-17 90.5 72 66.7
PGSC0003DMG400014674 Solanum tuberosum HOM05D003695 ORTHO05D004788 7.4e-17 90.5 90 57.8
THA.LOC104807186 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 7.4e-17 90.5 73 67.1
TAR625G0891 Trochodendron aralioides HOM05D003695 ORTHO05D004788 7.4e-17 90.5 73 69.9
CSS0016232 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 9.7e-17 90.1 74 64.9
Cfa005327 Carpinus fangiana HOM05D003695 ORTHO05D004788 9.7e-17 90.1 73 68.5
Haze_02053 Corylus avellana HOM05D003695 ORTHO05D004788 9.7e-17 90.1 73 68.5
Thhalv10022599m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 9.7e-17 90.1 73 67.1
Glyma.05G122800 Glycine max HOM05D003695 ORTHO05D004788 9.7e-17 90.1 73 67.1
QL02p073794 Quercus lobata HOM05D003695 ORTHO05D004788 9.7e-17 90.1 73 68.5
Hma1.2p1_0271F.1_g108980 Hydrangea macrophylla HOM05D003695 ORTHO05D004788 1.3e-16 89.7 92 56.5
Lalb_Chr07g0189201 Lupinus albus HOM05D003695 ORTHO05D004788 1.3e-16 89.7 73 67.1
Phvul.002G202700 Phaseolus vulgaris HOM05D003695 ORTHO05D004788 1.3e-16 89.7 74 66.2
Sabra04G0138000 Salix brachista HOM05D003695 ORTHO05D004788 1.3e-16 89.7 73 67.1
VMungo0251G1743 Vigna mungo HOM05D003695 ORTHO05D004788 1.3e-16 89.7 74 66.2
Actinidia18006 Actinidia chinensis HOM05D003695 ORTHO05D004788 1.6e-16 89.4 73 67.1
Actinidia20564 Actinidia chinensis HOM05D003695 ORTHO05D004788 1.6e-16 89.4 73 67.1
CANSAT25G1589 Cannabis sativa HOM05D003695 ORTHO05D004788 1.6e-16 89.4 73 67.1
CAN.G1235.1 Capsicum annuum HOM05D003695 ORTHO05D004788 1.6e-16 89.4 72 65.3
CiPaw.05G088700 Carya illinoinensis HOM05D003695 ORTHO05D004788 1.6e-16 89.4 73 67.1
ClCG02G003540 Citrullus lanatus HOM05D003695 ORTHO05D004788 1.6e-16 89.4 73 67.1
Nitab4.5_0001700g0110 Nicotiana tabacum HOM05D003695 ORTHO05D004788 1.6e-16 89.4 90 56.7
Nitab4.5_0003828g0040 Nicotiana tabacum HOM05D003695 ORTHO05D004788 1.6e-16 89.4 90 56.7
Peaxi162Scf00205g00012 Petunia axillaris HOM05D003695 ORTHO05D004788 1.6e-16 89.4 72 65.3
Potri.004G204400 Populus trichocarpa HOM05D003695 ORTHO05D004788 1.6e-16 89.4 73 67.1
Solyc01g112150.3 Solanum lycopersicum HOM05D003695 ORTHO05D004788 1.6e-16 89.4 90 56.7
PGSC0003DMG400016827 Solanum tuberosum HOM05D003695 ORTHO05D004788 1.6e-16 89.4 90 56.7
Glyma.08G077800 Glycine max HOM05D003695 ORTHO05D004788 2.2e-16 89.0 73 65.8
MSTRG.5469 Avicennia marina HOM05D003695 ORTHO05D004788 2.8e-16 88.6 76 63.2
CiPaw.06G118100 Carya illinoinensis HOM05D003695 ORTHO05D004788 2.8e-16 88.6 73 65.8
TAR381G0785 Trochodendron aralioides HOM05D003695 ORTHO05D004788 2.8e-16 88.6 73 67.1
AL6G43520 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 3.7e-16 88.2 73 67.1
Psat7g095320 Pisum sativum HOM05D003695 ORTHO05D004788 3.7e-16 88.2 73 65.8
Sp3g31410 Schrenkiella parvula HOM05D003695 ORTHO05D004788 3.7e-16 88.2 76 65.8
Lsat_1_v5_gn_9_39861 Lactuca sativa HOM05D003695 ORTHO05D004788 6.3e-16 87.4 73 65.8
MSTRG.27620 Avicennia marina HOM05D003695 ORTHO05D004788 8.2e-16 87.0 73 63.0
Nn6g31732 Nelumbo nucifera HOM05D003695 ORTHO05D004788 8.2e-16 87.0 73 64.4
Rhsim11G0196800 Rhododendron simsii HOM05D003695 ORTHO05D004788 8.2e-16 87.0 73 65.8
HanXRQChr14g0459051 Helianthus annuus HOM05D003695 ORTHO05D004788 1.1e-15 86.7 76 63.2
RcHm_v2.0_Chr7g0225341 Rosa chinensis HOM05D003695 ORTHO05D004788 1.1e-15 86.7 73 64.4
arahy.Tifrunner.gnm1.ann1.50NG3N Arachis hypogaea HOM05D003695 ORTHO05D004788 1.4e-15 86.3 72 63.9
arahy.Tifrunner.gnm1.ann1.I3VYS4 Arachis hypogaea HOM05D003695 ORTHO05D004788 1.4e-15 86.3 72 63.9
arahy.Tifrunner.gnm1.ann1.KDN8FX Arachis hypogaea HOM05D003695 ORTHO05D004788 1.4e-15 86.3 72 63.9
arahy.Tifrunner.gnm1.ann1.Q95X63 Arachis hypogaea HOM05D003695 ORTHO05D004788 1.4e-15 86.3 72 63.9
ClCG02G010010 Citrullus lanatus HOM05D003695 ORTHO05D004788 1.8e-15 85.9 73 61.6
Ca_18316_v3 Cicer arietinum L. HOM05D003695 ORTHO05D004788 2.4e-15 85.5 72 62.5
MELO3C022592.2 Cucumis melo HOM05D003695 ORTHO05D004788 2.4e-15 85.5 73 61.6
CsaV3_5G012530 Cucumis sativus L. HOM05D003695 ORTHO05D004788 2.4e-15 85.5 73 61.6
Lj4g0019363 Lotus japonicus HOM05D003695 ORTHO05D004788 2.4e-15 85.5 72 65.3
Nn5g30948 Nelumbo nucifera HOM05D003695 ORTHO05D004788 2.4e-15 85.5 73 63.0
Sed0023045 Sechium edule HOM05D003695 ORTHO05D004788 3.1e-15 85.1 73 64.4
Cc09_g10660 Coffea canephora HOM05D003695 ORTHO05D004788 4.1e-15 84.7 74 62.2
Medtr4g094405 Medicago truncatula HOM05D003695 ORTHO05D004788 4.1e-15 84.7 76 60.5
SGA_v2.0_scaffold32G13340 Striga asiatica HOM05D003695 ORTHO05D004788 4.1e-15 84.7 73 63.0
MELO3C013262.2 Cucumis melo HOM05D003695 ORTHO05D004788 5.3e-15 84.3 73 65.8
CsaV3_7G001760 Cucumis sativus L. HOM05D003695 ORTHO05D004788 5.3e-15 84.3 73 65.8
Lsat_1_v5_gn_1_280 Lactuca sativa HOM05D003695 ORTHO05D004788 5.3e-15 84.3 73 63.0
SalBow1G1498 Salvia bowleyana HOM05D003695 ORTHO05D004788 5.3e-15 84.3 90 52.2
FAN15G0675 Fragaria x ananassa HOM05D003695 ORTHO05D004788 6.9e-15 84.0 72 63.9
Oeu021964.1 Olea europaea HOM05D003695 ORTHO05D004788 9.0e-15 83.6 78 60.3
DCAR_006289 Daucus carota HOM05D003695 ORTHO05D004788 1.2e-14 83.2 72 63.9
FAN27G2019 Fragaria x ananassa HOM05D003695 ORTHO05D004788 1.2e-14 83.2 72 62.5
Oeu062472.1 Olea europaea HOM05D003695 ORTHO05D004788 1.5e-14 82.8 78 60.3
Oeu062473.1 Olea europaea HOM05D003695 ORTHO05D004788 1.5e-14 82.8 78 60.3
Migut.E00721 Erythranthe guttata HOM05D003695 ORTHO05D004788 4.5e-14 81.3 72 61.1
FvH4_2g16530 Fragaria vesca HOM05D003695 ORTHO05D004788 4.5e-14 81.3 72 61.1
Gohir.A01G174400 Gossypium hirsutum HOM05D003695 ORTHO05D004788 5.9e-14 80.9 73 64.4
Sed0014704 Sechium edule HOM05D003695 ORTHO05D004788 5.9e-14 80.9 72 62.5
Aqoxy5G01038 Aquilegia oxysepala HOM05D003695 ORTHO05D004788 7.7e-14 80.5 73 53.4
FvH4_5g21340 Fragaria vesca HOM05D003695 ORTHO05D004788 7.7e-14 80.5 72 58.3
PSO170G1984 Papaver somniferum HOM05D003695 ORTHO05D004788 2.9e-13 78.6 74 54.1
FAN08G1272 Fragaria x ananassa HOM05D003695 ORTHO05D004788 3.8e-13 78.2 73 58.9
Hund28543 Selenicereus undatus HOM05D003695 ORTHO05D004788 3.8e-13 78.2 73 61.6
Hund28545 Selenicereus undatus HOM05D003695 ORTHO05D004788 3.8e-13 78.2 73 61.6
CDE07G1944 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 8.5e-13 77.0 72 55.6
ATR0661G017 Amborella trichopoda HOM05D003695 ORTHO05D004788 1.1e-12 76.6 74 51.4
CDE04G2739 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 1.1e-12 76.6 72 55.6
MBI05_g12019_MAGBIO Magnolia biondii HOM05D003695 ORTHO05D004788 1.1e-12 76.6 79 57.0
Sc18g0005940 Simmondsia chinensis HOM05D003695 ORTHO05D004788 1.9e-12 75.9 97 50.5
EL10Ac9g21259 Beta vulgaris HOM05D003695 ORTHO05D004788 3.2e-12 75.1 74 59.5
Ah.02g124580 Amaranthus hybridus HOM05D003695 ORTHO05D004788 4.2e-12 74.7 73 58.9
Ah.11g043800 Amaranthus hybridus HOM05D003695 ORTHO05D004788 5.5e-12 74.3 73 58.9
SEGI_21511 Sequoiadendron giganteum HOM05D003695 ORTHO05D004788 5.5e-12 74.3 74 52.7
AL7G20270 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 1.2e-11 73.2 83 54.2
COL.COLO4_17937 Corchorus olitorius HOM05D003695 ORTHO05D004788 1.6e-11 72.8 55 67.3
Gohir.D01G165600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 2.7e-11 72.0 66 60.6
Gorai.002G206000 Gossypium raimondii HOM05D003695 ORTHO05D004788 2.7e-11 72.0 66 60.6
Pp3c4_5220 Physcomitrium patens HOM05D003695 ORTHO05D004788 4.6e-11 71.2 74 51.4
Atru.chr9.527 Acer truncatum HOM05D003695 ORTHO05D004788 6.1e-11 70.9 62 62.9
Lj5A173T63 Lonicera japonica HOM05D003695 ORTHO05D004788 1.4e-10 69.7 73 54.8
CSS0036850 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 1.8e-10 69.3 73 53.4
Mapoly0007s0195 Marchantia polymorpha HOM05D003695 ORTHO05D004788 1.8e-10 69.3 74 50.0
HPP92_008376 Vanilla planifolia HOM05D003695 ORTHO05D004788 3.0e-10 68.6 78 53.8
BcaB01g00720 Brassica carinata HOM05D003695 ORTHO05D004788 5.1e-10 67.8 69 53.6
QL11p053951 Quercus lobata HOM05D003695 ORTHO05D004788 5.1e-10 67.8 55 65.5
vmacro21804 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 6.7e-10 67.4 55 63.6
CARHR239630 Cardamine hirsuta HOM05D003695 ORTHO05D004788 1.5e-09 66.2 68 54.4
CBR_g41372 Chara braunii HOM05D003695 ORTHO05D004788 1.5e-09 66.2 77 46.8
vmacro08752 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 1.5e-09 66.2 55 61.8
ECA232G0128 Erigeron canadensis HOM05D003695 ORTHO05D004788 2.0e-09 65.9 58 60.3
Thhalv10003843m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 4.3e-09 64.7 69 52.2
FAN24G2440 Fragaria x ananassa HOM05D003695 ORTHO05D004788 4.3e-09 64.7 110 39.1
DCAR_015668 Daucus carota HOM05D003695 ORTHO05D004788 5.7e-09 64.3 55 58.2
Sopen01g054200 Solanum pennellii HOM05D003695 ORTHO05D004788 5.7e-09 64.3 73 50.7
Sopen10g027010 Solanum pennellii HOM05D003695 ORTHO05D004788 7.4e-09 63.9 55 61.8
Pp3c12_11250 Physcomitrium patens HOM05D003695 ORTHO05D004788 9.7e-09 63.5 74 47.3
AUR62027130 Chenopodium quinoa HOM05D003695 ORTHO05D004788 2.8e-08 62.0 67 58.2
Cre12.g521350 Chlamydomonas reinhardtii HOM05D003695 ORTHO05D004788 3.7e-08 61.6 68 45.6
SHI55151 Sapria himalayana HOM05D003695 ORTHO05D004788 8.2e-08 60.5 65 52.3
AagrBONN_evm.TU.Sc2ySwM_117.2597 Anthoceros agrestis HOM05D003695 ORTHO05D004788 1.4e-07 59.7 74 44.6
CARHR286350 Cardamine hirsuta HOM05D003695 ORTHO05D004788 9.1e-07 57.0 54 55.6
BcaB07g29909 Brassica carinata HOM05D003695 ORTHO05D004788 2.0e-06 55.8 56 53.6
BcaC03g17368 Brassica carinata HOM05D003695 ORTHO05D004788 2.6e-06 55.5 58 51.7
BolC2t11383H Brassica oleracea HOM05D003695 ORTHO05D004788 2.6e-06 55.5 58 51.7
GSVIVG01019333001 Vitis vinifera HOM05D003695 ORTHO05D038627 2.6e-06 55.5 52 53.8


User provided reference genes

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