Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 4.4e-238 827.8 492 100.0
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 5.1e-202 708.0 494 88.9
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 1.5e-193 679.9 508 80.1
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 1.8e-186 656.4 513 77.8
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 8.2e-184 647.5 508 81.3
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 2.4e-183 646.0 508 81.5
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 2.4e-183 646.0 520 75.2
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 2.2e-181 639.4 525 78.5
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 6.7e-178 627.9 497 76.9
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 2.4e-151 539.7 507 70.4
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.2e-139 500.7 500 67.0
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 2.8e-131 473.0 490 64.7
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 5.8e-129 465.3 500 58.4
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 2.9e-128 463.0 494 65.2
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.7e-120 437.2 496 59.3
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.2e-120 436.8 496 59.3
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-119 434.5 495 59.0
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 6.6e-117 425.2 416 67.8
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 6.6e-117 425.2 492 55.9
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.1e-116 424.5 494 61.5
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 3.3e-116 422.9 504 55.2
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 9.6e-116 421.4 484 53.9
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 2.8e-115 419.9 514 53.9
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 9.0e-114 414.8 496 53.8
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 3.4e-113 412.9 439 56.0
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 7.6e-113 411.8 504 54.8
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 9.9e-113 411.4 486 54.3
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 2.2e-112 410.2 432 59.0
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 3.8e-112 409.5 502 55.2
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 4.9e-112 409.1 427 59.5
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 1.1e-111 407.9 511 52.3
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.1e-111 407.9 488 55.9
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.7e-110 403.3 495 52.9
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.5e-110 402.9 493 55.4
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.3e-109 401.0 485 51.8
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 2.3e-109 400.2 494 52.6
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.3e-109 400.2 494 52.6
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 3.0e-109 399.8 505 54.1
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 5.1e-109 399.1 500 54.6
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 5.6e-108 395.6 489 51.3
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 7.3e-108 395.2 496 54.2
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 7.3e-108 395.2 502 52.4
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 9.6e-108 394.8 504 54.8
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 3.6e-107 392.9 473 54.1
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.4e-106 391.0 482 51.0
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 5.8e-105 385.6 470 55.5
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 7.6e-105 385.2 437 54.2
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 2.2e-104 383.6 458 55.5
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 3.8e-104 382.9 486 54.1
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 2.4e-103 380.2 508 51.2
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 2.4e-103 380.2 484 49.6
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 4.2e-103 379.4 477 54.3
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 7.1e-103 378.6 422 57.6
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 9.3e-103 378.3 473 51.4
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 9.3e-103 378.3 496 52.0
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.6e-102 377.5 422 57.6
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 2.7e-102 376.7 489 51.3
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 6.0e-102 375.6 430 56.0
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 6.0e-102 375.6 479 51.8
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.0e-101 374.8 479 50.1
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 1.3e-101 374.4 496 52.0
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 2.3e-101 373.6 480 51.5
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.9e-100 370.5 498 47.6
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.9e-100 370.5 487 51.1
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 1.9e-100 370.5 431 55.5
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 3.3e-100 369.8 435 52.4
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 2.8e-99 366.7 494 51.8
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 4.5e-97 359.4 476 49.6
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 2.2e-96 357.1 475 48.6
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 7.1e-95 352.1 473 49.0
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 1.2e-94 351.3 510 46.5
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.6e-94 350.9 501 49.5
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.6e-94 350.9 501 49.7
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.9e-93 346.3 501 48.9
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 6.7e-93 345.5 504 46.4
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 6.7e-93 345.5 428 54.0
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 9.6e-92 341.7 509 48.5
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 1.6e-91 340.9 547 44.2
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.4e-90 337.8 483 50.9
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 1.8e-90 337.4 507 45.8
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 4.0e-90 336.3 500 44.4
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 9.0e-90 335.1 499 47.1
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.5e-89 334.3 472 46.8
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.6e-89 333.6 435 48.7
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 5.8e-89 332.4 442 48.0
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 1.7e-88 330.9 432 47.9
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.2e-88 330.5 484 47.7
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 2.2e-88 330.5 460 50.7
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 3.8e-88 329.7 539 47.3
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 3.8e-88 329.7 441 47.6
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.0e-88 329.3 473 50.5
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 5.5e-87 325.9 514 43.0
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 9.3e-87 325.1 587 42.4
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.2e-86 324.7 466 49.4
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.1e-86 323.9 496 48.4
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.1e-86 323.9 383 55.6
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 2.7e-86 323.6 505 47.9
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 3.5e-86 323.2 413 54.0
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 4.6e-86 322.8 507 45.4
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 4.6e-86 322.8 330 61.8
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 6.1e-86 322.4 477 47.6
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.0e-85 321.6 509 43.4
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 4.8e-83 312.8 415 51.1
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 4.8e-83 312.8 461 47.7
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 1.1e-82 311.6 428 46.7
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 5.3e-82 309.3 496 45.6
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 6.9e-82 308.9 465 47.1
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.0e-81 307.4 475 46.5
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-79 301.6 486 48.6
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.4e-79 301.2 364 54.4
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 6.1e-78 295.8 295 68.8
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 6.1e-78 295.8 479 47.2
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.0e-77 293.5 421 50.4
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.1e-76 291.6 502 42.2
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.2e-75 287.3 456 43.4
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 2.4e-74 283.9 282 58.5
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 3.2e-71 273.5 473 42.5
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 4.8e-67 259.6 583 37.0
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.1e-66 258.5 447 41.2
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 1.0e-64 251.9 275 56.7
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 2.2e-64 250.8 239 62.3
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 1.5e-63 248.1 420 42.4
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 1.5e-63 248.1 434 40.6
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 7.4e-60 235.7 439 43.5
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 4.5e-57 226.5 295 48.8
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 1.3e-56 224.9 442 40.0
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.3e-48 198.4 408 41.9
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 8.0e-46 189.1 424 33.5
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 3.4e-44 183.7 178 71.3
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 8.3e-43 179.1 444 33.6
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.5e-41 173.3 282 40.8
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.0e-36 157.9 141 79.4
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 6.2e-30 136.3 419 30.3
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 4.1e-26 123.6 462 30.1
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 2.3e-24 117.9 166 51.8
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.1e-22 111.3 100 57.0
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 4.7e-22 110.2 286 33.6
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.7e-19 101.7 66 75.8
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 5.4e-18 96.7 91 56.0
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 7.1e-18 96.3 158 39.2
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 9.2e-18 95.9 199 40.2
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.3e-16 91.3 129 45.7
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 5.1e-16 90.1 81 56.8
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 2.5e-15 87.8 194 38.7
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 9.5e-15 85.9 72 52.8
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 3.1e-13 80.9 179 36.3
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 3.4e-12 77.4 400 28.8
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 7.6e-12 76.3 199 36.2
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.3e-11 75.5 268 32.8
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 3.7e-11 73.9 153 39.2
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.3e-08 65.5 260 26.2
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 3.0e-08 64.3 199 36.2
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 3.9e-08 63.9 72 48.6
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 1.9e-07 61.6 107 37.4
BcaC06g32907 Brassica carinata HOM05D004401 ORTHO05D005169 8.1e-06 56.2 38 81.6


User provided reference genes

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