Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 9.9e-178 626.7 325 100.0
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.2e-162 576.6 325 92.3
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 6.1e-151 537.7 328 88.1
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 8.7e-150 533.9 326 86.2
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 2.5e-149 532.3 326 87.4
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 9.7e-149 530.4 327 85.6
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.1e-139 500.4 326 79.1
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.4e-139 500.0 324 82.1
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 2.4e-139 499.2 323 81.7
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.9e-139 497.7 327 80.1
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 9.1e-139 497.3 324 81.5
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.7e-137 493.0 327 79.8
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 9.7e-133 477.2 358 73.7
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 3.2e-128 462.2 325 77.2
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.8e-103 379.4 323 62.2
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 6.4e-84 315.1 323 52.3
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.4e-83 313.9 326 52.1
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.4e-83 313.9 324 54.9
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 4.1e-83 312.4 325 51.7
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 5.4e-83 312.0 268 59.0
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 9.2e-83 311.2 326 53.1
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.6e-82 310.5 325 50.5
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 2.1e-82 310.1 270 58.1
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.1e-82 310.1 325 52.3
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 2.7e-82 309.7 282 57.1
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.5e-82 309.3 304 53.0
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 4.6e-82 308.9 325 51.7
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.7e-81 307.0 269 59.5
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 2.3e-81 306.6 317 52.4
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.0e-81 306.2 324 52.2
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 8.6e-81 304.7 325 53.5
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.1e-80 304.3 270 56.3
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.5e-80 303.9 316 52.5
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 3.3e-80 302.8 321 53.0
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.3e-80 302.8 321 52.3
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 3.3e-80 302.8 272 54.8
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 7.3e-80 301.6 272 54.8
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 9.5e-80 301.2 324 51.5
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.2e-79 300.8 311 49.8
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.2e-79 300.8 275 55.6
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.2e-79 300.8 268 56.3
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.1e-79 300.1 278 54.0
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 2.8e-79 299.7 275 54.9
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 3.6e-79 299.3 314 51.0
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 4.7e-79 298.9 269 52.8
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.1e-79 298.1 270 57.4
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.1e-79 298.1 270 57.4
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.1e-78 297.7 281 53.7
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.1e-78 297.7 310 51.9
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.4e-78 297.4 270 54.4
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.8e-78 297.0 327 49.5
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 2.3e-78 296.6 329 48.3
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 2.3e-78 296.6 270 52.6
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 3.1e-78 296.2 290 50.0
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.1e-78 296.2 270 55.2
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 4.0e-78 295.8 274 54.0
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 5.2e-78 295.4 281 52.0
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 6.8e-78 295.0 314 51.3
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 6.8e-78 295.0 270 55.2
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 1.5e-77 293.9 273 56.4
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.5e-77 293.9 321 49.8
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 2.6e-77 293.1 307 50.8
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 7.6e-77 291.6 269 54.3
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 9.9e-77 291.2 272 55.5
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 2.9e-76 289.7 300 51.0
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 4.9e-76 288.9 276 50.7
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 4.9e-76 288.9 275 53.8
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 4.9e-76 288.9 324 46.9
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 6.4e-76 288.5 308 48.7
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 1.1e-75 287.7 339 48.4
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 5.4e-75 285.4 265 55.1
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 7.1e-75 285.0 273 50.9
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.6e-74 283.9 327 47.7
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.6e-74 283.9 283 49.8
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 1.6e-74 283.9 269 55.4
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.1e-74 283.5 308 48.1
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 6.0e-74 282.0 268 54.1
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 6.0e-74 282.0 324 46.9
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 6.0e-74 282.0 315 47.0
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 7.8e-74 281.6 286 50.3
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 7.8e-74 281.6 339 49.3
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.3e-73 280.8 314 47.8
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.3e-73 280.8 297 51.2
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 2.3e-73 280.0 286 50.0
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 2.3e-73 280.0 315 46.3
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 8.6e-73 278.1 308 46.1
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.5e-72 276.6 270 51.5
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 4.3e-72 275.8 315 44.8
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 8.1e-71 271.6 311 46.9
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 8.1e-71 271.6 268 48.5
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.1e-70 271.2 313 45.4
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 4.0e-70 269.2 315 44.1
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.4e-67 260.8 325 45.5
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.9e-67 260.4 313 43.8
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 3.2e-67 259.6 326 46.3
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 2.3e-65 253.4 302 46.4
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 3.9e-65 252.7 279 48.0
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 4.3e-64 249.2 275 49.5
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.6e-63 247.3 277 48.4
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 4.8e-63 245.7 318 42.5
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 1.1e-62 244.6 238 54.6
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.4e-62 244.2 289 46.0
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 2.0e-61 240.4 322 42.2
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 7.6e-61 238.4 289 43.9
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.4e-59 234.2 272 45.6
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 6.0e-58 228.8 268 43.3
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.0e-57 228.0 270 43.3
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.0e-57 226.5 318 41.2
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 8.7e-57 224.9 327 40.4
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.5e-56 224.2 309 39.8
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.5e-56 223.4 274 42.3
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 4.3e-56 222.6 269 45.7
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.1e-55 220.3 300 41.7
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 2.8e-55 219.9 206 52.9
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 8.1e-55 218.4 268 42.2
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 5.3e-54 215.7 245 49.0
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.9e-54 215.3 205 55.1
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.9e-54 215.3 205 55.1
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 9.0e-54 214.9 265 45.3
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 5.8e-53 212.2 311 39.9
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 4.2e-51 206.1 217 50.2
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 9.3e-51 204.9 315 38.1
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 4.6e-50 202.6 199 52.3
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.6e-50 202.6 252 42.9
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 2.5e-48 196.8 273 41.0
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.8e-46 190.7 261 39.1
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.9e-44 183.3 266 41.0
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.9e-44 183.3 238 39.5
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 4.2e-43 179.5 174 52.9
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.5e-43 179.1 267 39.3
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 2.1e-42 177.2 269 36.1
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 6.0e-42 175.6 179 52.5
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.3e-40 169.9 264 36.0
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.1e-39 167.2 271 35.8
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 6.3e-39 165.6 283 34.6
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.5e-37 161.0 262 35.9
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 5.1e-25 119.4 210 38.6
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 2.2e-20 104.0 97 52.6
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.2e-19 99.8 131 45.8
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.4e-16 89.0 66 63.6
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.4e-16 89.0 66 63.6
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.8e-15 87.0 206 31.6
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 2.6e-13 80.5 105 44.8
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.2e-12 77.4 134 32.8
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 2.5e-11 73.9 263 26.2
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.2e-10 71.6 268 27.2
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.0e-09 68.6 86 39.5
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 2.3e-09 67.4 266 27.1
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 6.3e-07 59.3 90 35.6


User provided reference genes

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