Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.6e-62 242.7 126 100.0
AT4G37710 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 2.9e-53 211.8 126 89.7
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 1.0e-45 186.8 127 81.9
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 5.0e-45 184.5 126 82.5
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 1.1e-44 183.3 127 80.3
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 1.6e-43 179.5 127 79.5
CARHR246100 Cardamine hirsuta HOM05D009364 ORTHO05D004599 4.7e-43 177.9 118 80.5
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 8.1e-43 177.2 127 78.7
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 8.1e-43 177.2 127 78.7
Thhalv10027223m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 6.8e-42 174.1 127 78.7
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 1.2e-38 163.3 114 83.3
Sp7g35360 Schrenkiella parvula HOM05D009364 ORTHO05D004599 2.1e-38 162.5 127 76.4
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 7.8e-38 160.6 119 76.5
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 7.8e-38 160.6 119 76.5
BcaNung02084 Brassica carinata HOM05D009364 ORTHO05D004599 1.3e-37 159.8 119 76.5
BcaC06g33374 Brassica carinata HOM05D009364 ORTHO05D004599 2.5e-36 155.6 119 74.8
C07p62590 Brassica napus HOM05D009364 ORTHO05D004599 2.5e-36 155.6 119 74.8
BolC7t46674H Brassica oleracea HOM05D009364 ORTHO05D004599 2.5e-36 155.6 119 74.8
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 2.2e-24 115.9 136 55.1
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 7.3e-20 100.9 147 49.0
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 2.1e-19 99.4 134 51.5
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 6.2e-19 97.8 134 50.0
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.1e-18 97.1 134 50.7
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.8e-18 96.3 134 50.0
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 5.3e-18 94.7 150 47.3
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 5.3e-18 94.7 150 47.3
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 6.4e-16 87.8 136 46.3
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 1.9e-15 86.3 134 47.0
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 1.9e-15 86.3 148 45.9
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 1.9e-15 86.3 148 45.9
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 1.6e-14 83.2 92 56.5
Aa31LG7G13930 Aethionema arabicum HOM05D009364 ORTHO05D004599 7.6e-09 64.3 120 43.3
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 2.9e-08 62.4 78 44.9
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 4.9e-08 61.6 80 45.0
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 6.4e-08 61.2 66 47.0
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 6.4e-08 61.2 66 47.0
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 6.4e-08 61.2 88 40.9
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 6.4e-08 61.2 59 52.5
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 8.4e-08 60.8 66 45.5
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 8.4e-08 60.8 66 45.5
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.9e-07 59.7 59 50.8
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 1.9e-07 59.7 66 47.0
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 1.9e-07 59.7 122 33.6
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 2.4e-07 59.3 80 42.5
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 2.4e-07 59.3 93 39.8
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 3.2e-07 58.9 53 54.7
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 3.2e-07 58.9 59 52.5
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 4.2e-07 58.5 84 41.7
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 7.1e-07 57.8 66 45.5
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 9.3e-07 57.4 103 39.8
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 9.3e-07 57.4 60 51.7
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.2e-06 57.0 57 50.9
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 1.6e-06 56.6 107 41.1
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 1.6e-06 56.6 78 42.3
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.6e-06 56.6 81 39.5
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.1e-06 56.2 105 37.1
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 2.7e-06 55.8 80 43.8
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 3.5e-06 55.5 92 44.6
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 4.6e-06 55.1 80 38.8
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 4.6e-06 55.1 71 46.5
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 6.0e-06 54.7 105 36.2
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 6.0e-06 54.7 51 54.9
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 6.0e-06 54.7 51 54.9
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 6.0e-06 54.7 51 54.9
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 6.0e-06 54.7 80 41.2
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 6.0e-06 54.7 63 50.8
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 6.0e-06 54.7 52 53.8
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 6.0e-06 54.7 65 50.8
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 7.9e-06 54.3 81 39.5
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 7.9e-06 54.3 62 45.2
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 7.9e-06 54.3 54 50.0
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 7.9e-06 54.3 54 50.0


User provided reference genes

Program Settings