Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G12850 Arabidopsis lyrata HOM05D002243 ORTHO05D001848 4.9e-178 628.2 467 100.0
AT4G37820 Arabidopsis thaliana HOM05D002243 ORTHO05D001848 1.2e-91 341.3 328 70.4
Carub.0007s0242 Capsella rubella HOM05D002243 ORTHO05D001848 5.4e-84 315.8 323 68.4
CARHR246210 Cardamine hirsuta HOM05D002243 ORTHO05D001848 5.2e-71 272.7 315 61.6
THA.LOC104807645 Tarenaya hassleriana HOM05D002243 ORTHO05D001848 7.9e-43 179.1 338 45.9
Aa31LG6G14720 Aethionema arabicum HOM05D002243 ORTHO05D001848 6.9e-39 166.0 313 49.2
Thhalv10024837m.g Eutrema salsugineum HOM05D002243 ORTHO05D001848 1.3e-37 161.8 571 49.0
BraA08t34249Z Brassica rapa HOM05D002243 ORTHO05D001848 1.1e-36 158.7 317 43.8
A08p22860 Brassica napus HOM05D002243 ORTHO05D001848 1.8e-34 151.4 314 43.9
BraA04t17359Z Brassica rapa HOM05D002243 ORTHO05D001848 2.1e-32 144.4 362 38.7
A04p17320 Brassica napus HOM05D002243 ORTHO05D001848 6.2e-32 142.9 366 39.9
Sp4g01810 Schrenkiella parvula HOM05D002243 ORTHO05D001848 2.4e-31 141.0 380 37.9
Thhalv10000072m.g Eutrema salsugineum HOM05D002243 ORTHO05D001848 2.6e-30 137.5 346 39.3
C03p79030 Brassica napus HOM05D002243 ORTHO05D001848 6.7e-26 122.9 551 42.5
BolC3t20144H Brassica oleracea HOM05D002243 ORTHO05D001848 6.7e-26 122.9 320 39.4
Carub.0004s0193 Capsella rubella HOM05D002243 ORTHO05D001848 3.3e-25 120.6 116 60.3
AL4G12330 Arabidopsis lyrata HOM05D002243 ORTHO05D001848 4.8e-24 116.7 453 34.7
BcaB06g27840 Brassica carinata HOM05D002243 ORTHO05D001848 1.1e-23 115.5 319 37.3
Aa31LG7G14010 Aethionema arabicum HOM05D002243 ORTHO05D001848 1.4e-23 115.2 322 37.0
AT2G22795 Arabidopsis thaliana HOM05D002243 ORTHO05D001848 5.9e-22 109.8 107 63.6
BcaC01g00374 Brassica carinata HOM05D002243 ORTHO05D001848 2.2e-21 107.8 555 44.9
A09p57220 Brassica napus HOM05D002243 ORTHO05D001848 7.2e-20 102.8 140 47.1
BcaC07g41022 Brassica carinata HOM05D002243 ORTHO05D001848 1.6e-19 101.7 140 46.4
C08p40260 Brassica napus HOM05D002243 ORTHO05D001848 1.6e-19 101.7 140 46.4
BolC8t51594H Brassica oleracea HOM05D002243 ORTHO05D001848 1.6e-19 101.7 140 46.4
CARHR114080 Cardamine hirsuta HOM05D002243 ORTHO05D001848 5.3e-15 86.7 370 32.2
C04p52120 Brassica napus HOM05D002243 ORTHO05D001848 7.7e-14 82.8 370 30.5
Glyma.05G110000 Glycine max HOM05D002243 ORTHO05D001848 7.7e-14 82.8 72 61.1
ClCG01G017950 Citrullus lanatus HOM05D002243 ORTHO05D001848 1.3e-13 82.0 92 50.0
Hma1.2p1_1953F.1_g308845 Hydrangea macrophylla HOM05D002243 ORTHO05D001848 1.3e-13 82.0 85 51.8
Hma1.2p1_1953F.1_g308850 Hydrangea macrophylla HOM05D002243 ORTHO05D001848 1.3e-13 82.0 85 51.8
Ciclev10028128m.g Citrus clementina HOM05D002243 ORTHO05D001848 1.7e-13 81.6 81 53.1
Oeu061818.1 Olea europaea HOM05D002243 ORTHO05D001848 2.2e-13 81.3 88 46.6
Cfa006795 Carpinus fangiana HOM05D002243 ORTHO05D001848 6.5e-13 79.7 112 40.2
Phvul.003G231700 Phaseolus vulgaris HOM05D002243 ORTHO05D001848 6.5e-13 79.7 72 55.6
GSVIVG01006594001 Vitis vinifera HOM05D002243 ORTHO05D001848 8.5e-13 79.3 83 49.4
Prupe.6G213200 Prunus persica HOM05D002243 ORTHO05D001848 1.1e-12 79.0 129 44.2
Manes.18G052200 Manihot esculenta HOM05D002243 ORTHO05D001848 1.4e-12 78.6 199 34.7
Atru.chr5.2225 Acer truncatum HOM05D002243 ORTHO05D001848 1.9e-12 78.2 80 51.2
BraA09t41115Z Brassica rapa HOM05D002243 ORTHO05D001848 1.9e-12 78.2 390 28.2
Oeu059798.2 Olea europaea HOM05D002243 ORTHO05D001848 1.9e-12 78.2 95 41.1
Glyma.20G136900 Glycine max HOM05D002243 ORTHO05D001848 2.5e-12 77.8 343 30.0
arahy.Tifrunner.gnm1.ann1.XGM7WG Arachis hypogaea HOM05D002243 ORTHO05D001848 3.2e-12 77.4 294 29.6
Nitab4.5_0000396g0020 Nicotiana tabacum HOM05D002243 ORTHO05D001848 3.2e-12 77.4 167 32.9
Lalb_Chr16g0385891 Lupinus albus HOM05D002243 ORTHO05D001848 4.2e-12 77.0 175 38.9
Psat6g212880 Pisum sativum HOM05D002243 ORTHO05D001848 5.5e-12 76.6 67 53.7
Haze_03961 Corylus avellana HOM05D002243 ORTHO05D001848 7.2e-12 76.3 141 36.9
Medtr5g005430 Medicago truncatula HOM05D002243 ORTHO05D001848 7.2e-12 76.3 81 46.9
BcaC02g08599 Brassica carinata HOM05D002243 ORTHO05D001848 9.4e-12 75.9 338 30.2
BolC4t26786H Brassica oleracea HOM05D002243 ORTHO05D001848 9.4e-12 75.9 338 30.2
Migut.H00311 Erythranthe guttata HOM05D002243 ORTHO05D001848 1.2e-11 75.5 78 47.4
CsaV3_6G044480 Cucumis sativus L. HOM05D002243 ORTHO05D001848 1.6e-11 75.1 165 35.2
Dinv26979 Davidia involucrata HOM05D002243 ORTHO05D001848 1.6e-11 75.1 141 36.2
Lj5g0020290 Lotus japonicus HOM05D002243 ORTHO05D001848 2.1e-11 74.7 105 43.8
GSVIVG01037020001 Vitis vinifera HOM05D002243 ORTHO05D001848 2.1e-11 74.7 83 45.8
CiPaw.08G028200 Carya illinoinensis HOM05D002243 ORTHO05D001848 2.7e-11 74.3 330 30.0
Cc07_g07600 Coffea canephora HOM05D023692 ORTHO05D001848 2.7e-11 74.3 111 39.6
Dinv44914 Davidia involucrata HOM05D002243 ORTHO05D001848 2.7e-11 74.3 281 32.0
Lj4g0010467 Lotus japonicus HOM05D002243 ORTHO05D001848 2.7e-11 74.3 107 43.0
MD10G1112600 Malus domestica HOM05D002243 ORTHO05D001848 2.7e-11 74.3 93 46.2
Peaxi162Scf00096g00157 Petunia axillaris HOM05D002243 ORTHO05D001848 3.6e-11 73.9 96 41.7
Potri.009G083900 Populus trichocarpa HOM05D002243 ORTHO05D001848 4.6e-11 73.6 107 42.1
TWI77G0733 Tripterygium wilfordii HOM05D002243 ORTHO05D001848 6.1e-11 73.2 140 39.3
VMungo0720G2670 Vigna mungo HOM05D002243 ORTHO05D001848 6.1e-11 73.2 295 30.5
Nitab4.5_0006325g0010 Nicotiana tabacum HOM05D002243 ORTHO05D001848 7.9e-11 72.8 136 36.0
Thecc.02G032300 Theobroma cacao HOM05D002243 ORTHO05D001848 7.9e-11 72.8 99 46.5
Psat4g088240 Pisum sativum HOM05D002243 ORTHO05D001848 1.0e-10 72.4 93 44.1
Atru.chr3.1086 Acer truncatum HOM05D002243 ORTHO05D001848 1.4e-10 72.0 91 44.0
Actinidia02430 Actinidia chinensis HOM05D002243 ORTHO05D001848 1.8e-10 71.6 73 50.7
Migut.B00490 Erythranthe guttata HOM05D002243 ORTHO05D001848 1.8e-10 71.6 222 31.1
TWI74G1522 Tripterygium wilfordii HOM05D002243 ORTHO05D001848 1.8e-10 71.6 142 37.3
vmacro01929 Vaccinium macrocarpon HOM05D002243 ORTHO05D001848 1.8e-10 71.6 74 47.3
CAN.G504.9 Capsicum annuum HOM05D002243 ORTHO05D001848 2.3e-10 71.2 115 42.6
PSO782G0611 Papaver somniferum HOM05D002243 ORTHO05D001848 2.3e-10 71.2 127 40.9
PGSC0003DMG400005118 Solanum tuberosum HOM05D002243 ORTHO05D001848 2.3e-10 71.2 75 50.7
AUR62030879 Chenopodium quinoa HOM05D002243 ORTHO05D001848 3.0e-10 70.9 76 51.3
Sabra09G0064600 Salix brachista HOM05D002243 ORTHO05D001848 3.0e-10 70.9 115 40.0
Sabra16G0180600 Salix brachista HOM05D002243 ORTHO05D001848 3.0e-10 70.9 80 46.2
Ah.01g024500 Amaranthus hybridus HOM05D002243 ORTHO05D001848 3.9e-10 70.5 76 48.7
MD05G1108600 Malus domestica HOM05D002243 ORTHO05D001848 5.1e-10 70.1 105 41.0
PSO832G2889 Papaver somniferum HOM05D002243 ORTHO05D001848 5.1e-10 70.1 127 40.2
Hund06501 Selenicereus undatus HOM05D002243 ORTHO05D001848 5.1e-10 70.1 75 50.7
Gorai.005G262800 Gossypium raimondii HOM05D002243 ORTHO05D001848 6.7e-10 69.7 79 44.3
Aqoxy5G01944 Aquilegia oxysepala HOM05D002243 ORTHO05D001848 8.8e-10 69.3 91 44.0
BcaNung04324 Brassica carinata HOM05D010391 ORTHO05D001848 8.8e-10 69.3 72 52.8
Gohir.D03G032300 Gossypium hirsutum HOM05D002243 ORTHO05D001848 8.8e-10 69.3 127 40.9
Medtr1g105890 Medicago truncatula HOM05D002243 ORTHO05D001848 8.8e-10 69.3 340 27.9
Potri.007G008600 Populus trichocarpa HOM05D002243 ORTHO05D001848 8.8e-10 69.3 130 39.2
Sopen01g049010 Solanum pennellii HOM05D002243 ORTHO05D001848 8.8e-10 69.3 122 43.4
Gorai.008G087300 Gossypium raimondii HOM05D002243 ORTHO05D001848 1.1e-09 68.9 387 27.1
CiPaw.07G039400 Carya illinoinensis HOM05D002243 ORTHO05D001848 1.5e-09 68.6 148 35.1
Glyma.01G241100 Glycine max HOM05D002243 ORTHO05D001848 1.5e-09 68.6 95 45.3
Duzib264G1092 Durio zibethinus HOM05D002243 ORTHO05D001848 2.0e-09 68.2 76 47.4
Gohir.D02G234800 Gossypium hirsutum HOM05D002243 ORTHO05D001848 2.0e-09 68.2 91 44.0
Lj9P338T47 Lonicera japonica HOM05D002243 ORTHO05D001848 2.0e-09 68.2 82 45.1
Manes.07G051400 Manihot esculenta HOM05D002243 ORTHO05D001848 2.0e-09 68.2 113 41.6
Phvul.007G048200 Phaseolus vulgaris HOM05D002243 ORTHO05D001848 2.0e-09 68.2 293 28.7
Rhsim10G0087400 Rhododendron simsii HOM05D002243 ORTHO05D001848 2.0e-09 68.2 133 39.8
C07p59860 Brassica napus HOM05D010391 ORTHO05D001848 2.5e-09 67.8 72 50.0
Gohir.A03G213300 Gossypium hirsutum HOM05D002243 ORTHO05D001848 2.5e-09 67.8 75 46.7
Gohir.A12G081200 Gossypium hirsutum HOM05D002243 ORTHO05D001848 2.5e-09 67.8 402 28.1
Medtr4g097790 Medicago truncatula HOM05D002243 ORTHO05D001848 2.5e-09 67.8 111 39.6
CDE02G1478 Ceratophyllum demersum HOM05D064956 ORTHO05D001848 3.3e-09 67.4 213 31.9
Ca_28397_v3 Cicer arietinum L. HOM05D002243 ORTHO05D001848 3.3e-09 67.4 94 41.5
Glyma.17G157100 Glycine max HOM05D002243 ORTHO05D001848 3.3e-09 67.4 183 34.4
Lalb_Chr09g0329371 Lupinus albus HOM05D002243 ORTHO05D001848 3.3e-09 67.4 131 36.6
Sed0013875 Sechium edule HOM05D002243 ORTHO05D001848 3.3e-09 67.4 371 29.6
PGSC0003DMG400030665 Solanum tuberosum HOM05D002243 ORTHO05D001848 3.3e-09 67.4 185 31.9
Gorai.003G033900 Gossypium raimondii HOM05D002243 ORTHO05D001848 4.3e-09 67.0 127 40.9
Duzib052G0991 Durio zibethinus HOM05D002243 ORTHO05D001848 5.7e-09 66.6 97 44.3
Manes.10G087900 Manihot esculenta HOM05D002243 ORTHO05D001848 7.4e-09 66.2 119 40.3
QL11p028600 Quercus lobata HOM05D002243 ORTHO05D001848 7.4e-09 66.2 81 49.4
QL11p028729 Quercus lobata HOM05D002243 ORTHO05D001848 7.4e-09 66.2 81 49.4
QL12p040753 Quercus lobata HOM05D002243 ORTHO05D001848 7.4e-09 66.2 347 27.4
Actinidia36403 Actinidia chinensis HOM05D002243 ORTHO05D001848 9.7e-09 65.9 124 37.1
Thhalv10025138m.g Eutrema salsugineum HOM05D010391 ORTHO05D001848 9.7e-09 65.9 72 50.0
Lj5P222T65 Lonicera japonica HOM05D002243 ORTHO05D001848 9.7e-09 65.9 353 30.0
MD15G1395300 Malus domestica HOM05D002243 ORTHO05D001848 9.7e-09 65.9 257 31.9
TAR376G0696 Trochodendron aralioides HOM05D002243 ORTHO05D001848 9.7e-09 65.9 267 30.0
Manes.13G106800 Manihot esculenta HOM05D002243 ORTHO05D001848 1.3e-08 65.5 142 36.6
MSTRG.20241 Avicennia marina HOM05D002243 ORTHO05D001848 1.7e-08 65.1 361 29.6
MD02G1193800 Malus domestica HOM05D002243 ORTHO05D001848 1.7e-08 65.1 181 33.1
FAN08G2076 Fragaria x ananassa HOM05D002243 ORTHO05D001848 2.2e-08 64.7 120 40.0
Lsat_1_v5_gn_4_159100 Lactuca sativa HOM05D002243 ORTHO05D001848 2.2e-08 64.7 99 35.4
Manes.12G119100 Manihot esculenta HOM05D002243 ORTHO05D001848 2.2e-08 64.7 145 35.9
QL06p038195 Quercus lobata HOM05D002243 ORTHO05D001848 2.2e-08 64.7 143 35.0
SalBow6G4432 Salvia bowleyana HOM05D002243 ORTHO05D001848 2.2e-08 64.7 348 27.9
Dinv01223 Davidia involucrata HOM05D002243 ORTHO05D001848 2.8e-08 64.3 316 29.7
ECA232G3326 Erigeron canadensis HOM05D002243 ORTHO05D001848 2.8e-08 64.3 108 38.0
Gohir.A02G148100 Gossypium hirsutum HOM05D002243 ORTHO05D001848 2.8e-08 64.3 353 28.9
Gohir.D12G078400 Gossypium hirsutum HOM05D002243 ORTHO05D001848 2.8e-08 64.3 384 26.6
DCAR_001867 Daucus carota HOM05D002243 ORTHO05D001848 3.7e-08 63.9 103 38.8
Hma1.2p1_2654F.1_g326230 Hydrangea macrophylla HOM05D002243 ORTHO05D001848 3.7e-08 63.9 79 43.0
SGA_v2.0_scaffold121G33087 Striga asiatica HOM05D002243 ORTHO05D001848 3.7e-08 63.9 108 37.0
VMungo0251G3413 Vigna mungo HOM05D002243 ORTHO05D001848 3.7e-08 63.9 168 36.3
Glyma.11G002700 Glycine max HOM05D002243 ORTHO05D001848 4.8e-08 63.5 364 28.8
HanXRQChr14g0447631 Helianthus annuus HOM05D002243 ORTHO05D001848 4.8e-08 63.5 103 38.8
Zm00001eb055870 Zea mays HOM05D034594 ORTHO05D001848 4.8e-08 63.5 158 32.3
Rhsim11G0148900 Rhododendron simsii HOM05D002243 ORTHO05D001848 6.3e-08 63.2 315 29.5
ATR0705G057 Amborella trichopoda HOM05D002243 ORTHO05D001848 8.2e-08 62.8 221 30.3
arahy.Tifrunner.gnm1.ann1.2Q65GK Arachis hypogaea HOM05D002243 ORTHO05D001848 8.2e-08 62.8 303 28.7
MSTRG.15339 Avicennia marina HOM05D002243 ORTHO05D001848 8.2e-08 62.8 118 35.6
CAN.G1061.5 Capsicum annuum HOM05D002243 ORTHO05D001848 8.2e-08 62.8 164 31.7
Haze_21939 Corylus avellana HOM05D002243 ORTHO05D001848 8.2e-08 62.8 370 27.8
Potri.002G112800 Populus trichocarpa HOM05D002243 ORTHO05D001848 8.2e-08 62.8 240 30.8
Sabra02G0089100 Salix brachista HOM05D002243 ORTHO05D001848 8.2e-08 62.8 257 27.6
Sed0009812 Sechium edule HOM05D002243 ORTHO05D001848 8.2e-08 62.8 127 36.2
HPP92_015701 Vanilla planifolia HOM05D002243 ORTHO05D001848 8.2e-08 62.8 215 30.2
HPP92_026661 Vanilla planifolia HOM05D002243 ORTHO05D001848 8.2e-08 62.8 215 30.2
FvH4_1g18591 Fragaria vesca HOM05D002243 ORTHO05D001848 1.1e-07 62.4 131 36.6
FAN19G3209 Fragaria x ananassa HOM05D002243 ORTHO05D001848 1.1e-07 62.4 131 36.6
PGR004G1094 Punica granatum HOM05D002243 ORTHO05D001848 1.1e-07 62.4 185 31.4
Sc03g0000700 Simmondsia chinensis HOM05D002243 ORTHO05D001848 1.4e-07 62.0 121 39.7
CiPaw.07G201100 Carya illinoinensis HOM05D002243 ORTHO05D001848 1.8e-07 61.6 353 28.3
Glyma.17G086000 Glycine max HOM05D002243 ORTHO05D001848 2.4e-07 61.2 333 28.5
Sabra07G0006700 Salix brachista HOM05D002243 ORTHO05D001848 2.4e-07 61.2 136 36.8
RcHm_v2.0_Chr2g0109401 Rosa chinensis HOM05D002243 ORTHO05D001848 3.1e-07 60.8 185 35.1
MSTRG.22198 Avicennia marina HOM05D002243 ORTHO05D001848 4.1e-07 60.5 126 35.7
CiPaw.06G162700 Carya illinoinensis HOM05D002243 ORTHO05D001848 4.1e-07 60.5 266 27.4
DCAR_025837 Daucus carota HOM05D002243 ORTHO05D001848 4.1e-07 60.5 103 35.9
MBI04_g06589_MAGBIO Magnolia biondii HOM05D002243 ORTHO05D001848 4.1e-07 60.5 96 41.7
RcHm_v2.0_Chr1g0336871 Rosa chinensis HOM05D002243 ORTHO05D001848 4.1e-07 60.5 106 38.7
CANSAT21G1644 Cannabis sativa HOM05D002243 ORTHO05D001848 6.9e-07 59.7 223 27.8
PGR031G0180 Punica granatum HOM05D002243 ORTHO05D001848 6.9e-07 59.7 177 30.5
ATR0767G056 Amborella trichopoda HOM05D002243 ORTHO05D001848 9.1e-07 59.3 53 45.3
MSTRG.23645 Avicennia marina HOM05D002243 ORTHO05D001848 9.1e-07 59.3 92 41.3
Potri.001G288800 Populus trichocarpa HOM05D002243 ORTHO05D001848 9.1e-07 59.3 95 38.9
MSTRG.2796 Avicennia marina HOM05D002243 ORTHO05D001848 1.2e-06 58.9 110 35.5
Lsat_1_v5_gn_2_81560 Lactuca sativa HOM05D002243 ORTHO05D001848 1.2e-06 58.9 251 29.9
Oeu005723.1 Olea europaea HOM05D002243 ORTHO05D001848 1.2e-06 58.9 347 28.2
Solyc01g106680.4 Solanum lycopersicum HOM05D002243 ORTHO05D001848 1.2e-06 58.9 267 29.2
COL.COLO4_17804 Corchorus olitorius HOM05D002243 ORTHO05D001848 1.5e-06 58.5 315 29.5
Oeu010475.1 Olea europaea HOM05D002243 ORTHO05D001848 1.5e-06 58.5 248 27.8
Oeu039769.1 Olea europaea HOM05D002243 ORTHO05D001848 2.0e-06 58.2 127 36.2
THA.LOC104819521 Tarenaya hassleriana HOM05D010391 ORTHO05D001848 2.0e-06 58.2 131 33.6
CDE07G0845 Ceratophyllum demersum HOM05D001149 ORTHO05D001848 2.6e-06 57.8 66 42.4
Eucgr.I00650 Eucalyptus grandis HOM05D002243 ORTHO05D001848 2.6e-06 57.8 390 24.1
Sed0002291 Sechium edule HOM05D002243 ORTHO05D372814 2.6e-06 57.8 168 33.3
unitig_61.g26040 Utricularia gibba HOM05D002243 ORTHO05D001848 3.4e-06 57.4 234 28.6
AUR62036624 Chenopodium quinoa HOM05D068200 ORTHO05D001848 4.5e-06 57.0 190 33.2
Lalb_Chr06g0164961 Lupinus albus HOM05D002243 ORTHO05D001848 4.5e-06 57.0 292 26.4
Thecc.01G079600 Theobroma cacao HOM05D002243 ORTHO05D001848 4.5e-06 57.0 413 24.9
TPR.G22426 Trifolium pratense HOM05D002243 ORTHO05D001848 4.5e-06 57.0 151 29.1
Aqoxy6G01532 Aquilegia oxysepala HOM05D002243 ORTHO05D001848 5.9e-06 56.6 279 28.3
Cfa004723 Carpinus fangiana HOM05D002243 ORTHO05D001848 5.9e-06 56.6 358 27.1
SGA_v2.0_scaffold269G46251 Striga asiatica HOM05D002243 ORTHO05D001848 5.9e-06 56.6 156 31.4
Migut.I00452 Erythranthe guttata HOM05D002243 ORTHO05D001848 7.7e-06 56.2 76 42.1


User provided reference genes

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