Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 1.8e-53 212.2 103 100.0
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 2.0e-52 208.8 103 98.1
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 3.8e-51 204.5 103 96.1
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 6.6e-51 203.8 103 96.1
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 2.5e-50 201.8 103 94.2
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 1.2e-49 199.5 103 93.2
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 3.6e-49 198.0 103 92.2
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 3.7e-46 188.0 103 90.3
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 3.7e-46 188.0 103 90.3
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 4.1e-45 184.5 103 85.4
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.6e-44 182.6 103 84.5
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 3.5e-44 181.4 131 71.8
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 3.7e-38 161.4 103 72.8
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.7e-38 161.4 103 72.8
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.7e-38 161.4 99 77.8
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.7e-38 161.4 99 79.8
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 4.9e-38 161.0 103 72.8
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.4e-38 160.6 103 72.8
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.4e-38 160.6 103 72.8
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.1e-37 159.8 100 79.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.4e-37 159.5 103 72.8
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 3.2e-37 158.3 103 72.8
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 3.2e-37 158.3 99 77.8
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 7.0e-37 157.1 99 74.7
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.6e-36 156.0 103 70.9
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 2.1e-36 155.6 97 75.3
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 6.0e-36 154.1 99 75.8
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.3e-35 152.9 104 73.1
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.3e-35 152.9 103 70.9
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 3.0e-35 151.8 102 72.5
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 6.6e-35 150.6 97 73.2
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.5e-34 149.4 99 70.7
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.9e-34 149.1 99 73.7
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 2.5e-34 148.7 99 72.7
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 3.3e-34 148.3 99 74.7
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 3.3e-34 148.3 99 70.7
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.3e-34 147.9 99 70.7
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 4.3e-34 147.9 98 70.4
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 5.6e-34 147.5 99 71.7
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.6e-34 147.5 99 71.7
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.2e-33 146.4 99 69.7
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.6e-33 146.0 99 69.7
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 1.6e-33 146.0 99 73.7
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.6e-33 146.0 99 71.7
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.1e-33 145.6 99 70.7
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 2.1e-33 145.6 99 70.7
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 2.1e-33 145.6 97 74.2
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 2.8e-33 145.2 97 71.1
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 3.6e-33 144.8 97 75.3
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 6.2e-33 144.1 103 71.8
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.1e-32 143.3 106 69.8
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.1e-32 143.3 97 72.2
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.1e-32 143.3 99 70.7
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.4e-32 142.9 96 70.8
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.4e-32 142.9 96 70.8
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 1.4e-32 142.9 98 71.4
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.8e-32 142.5 98 69.4
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 2.3e-32 142.1 99 68.7
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 4.0e-32 141.4 99 69.7
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 6.8e-32 140.6 97 69.1
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 8.9e-32 140.2 100 69.0
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 8.9e-32 140.2 99 67.7
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.0e-31 139.0 99 72.7
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.6e-31 138.7 99 69.7
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 2.6e-31 138.7 102 72.5
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 4.4e-31 137.9 98 71.4
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 5.8e-31 137.5 99 66.7
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 7.5e-31 137.1 95 70.5
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 7.5e-31 137.1 99 70.7
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 9.9e-31 136.7 97 68.0
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 9.9e-31 136.7 100 69.0
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 9.9e-31 136.7 98 68.4
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 9.9e-31 136.7 98 68.4
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 9.9e-31 136.7 100 69.0
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.7e-30 136.0 102 67.6
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.7e-30 136.0 74 91.9
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.7e-30 136.0 103 67.0
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.7e-30 136.0 93 67.7
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 4.9e-30 134.4 89 73.0
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 6.4e-30 134.0 96 68.8
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 8.3e-30 133.7 106 67.9
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 1.1e-29 133.3 99 66.7
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.1e-29 133.3 100 69.0
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.4e-29 132.9 99 67.7
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.4e-29 132.9 99 67.7
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 2.4e-29 132.1 89 71.9
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 4.1e-29 131.3 89 69.7
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 7.1e-29 130.6 100 69.0
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 1.2e-28 129.8 100 64.0
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 1.2e-28 129.8 102 65.7
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 1.2e-28 129.8 99 64.6
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.1e-28 129.0 98 67.3
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 2.1e-28 129.0 94 66.0
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 2.7e-28 128.6 89 68.5
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 4.6e-28 127.9 101 66.3
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 4.6e-28 127.9 98 69.4
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 4.6e-28 127.9 100 65.0
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 4.6e-28 127.9 100 65.0
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 6.0e-28 127.5 97 66.0
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 7.8e-28 127.1 102 67.6
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 7.8e-28 127.1 100 67.0
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.0e-27 126.7 100 66.0
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.0e-27 126.7 88 68.2
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.3e-27 126.3 102 61.8
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.7e-27 125.9 99 61.6
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 3.0e-27 125.2 99 63.6
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 3.0e-27 125.2 101 69.3
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 5.1e-27 124.4 101 61.4
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 6.6e-27 124.0 100 64.0
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 1.1e-26 123.2 74 87.8
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 1.1e-26 123.2 106 57.5
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.9e-26 122.5 98 66.3
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 2.5e-26 122.1 89 71.9
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.5e-26 122.1 90 66.7
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 7.3e-26 120.6 89 68.5
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.2e-25 119.8 100 61.0
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.6e-25 118.2 72 72.2
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 6.2e-25 117.5 91 69.2
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 2.4e-24 115.5 88 65.9
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 3.1e-24 115.2 99 60.6
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 5.2e-24 114.4 81 64.2
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 6.8e-24 114.0 91 65.9
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 8.9e-24 113.6 100 63.0
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.4e-23 111.7 89 64.0
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 3.4e-23 111.7 91 62.6
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 4.4e-23 111.3 92 67.4
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.2e-22 109.0 82 63.4
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.4e-21 106.3 90 60.0
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.4e-21 104.4 89 61.8
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 1.6e-20 102.8 94 56.4
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.5e-20 101.7 91 58.2
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.8e-16 89.4 99 49.5
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.8e-16 89.4 50 74.0
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 4.0e-16 88.2 74 64.9
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 2.6e-15 85.5 59 74.6
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 4.4e-15 84.7 106 47.2
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.7e-14 82.8 74 63.5
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.7e-14 82.8 109 46.8
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 2.4e-13 79.0 99 42.4
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 2.1e-12 75.9 58 67.2
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.7e-12 75.5 74 54.1
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 6.0e-12 74.3 76 59.2
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 1.7e-11 72.8 77 55.8
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.3e-11 72.4 70 47.1
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.1e-10 70.1 75 53.3
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.5e-10 69.7 71 46.5
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 3.6e-09 65.1 53 54.7
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 3.4e-07 58.5 60 46.7
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 5.8e-07 57.8 52 59.6
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 5.8e-07 57.8 52 59.6
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 7.6e-07 57.4 92 37.0
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 7.6e-07 57.4 84 34.5


User provided reference genes

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