Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.1e-146 523.5 315 100.0
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.1e-91 340.9 338 66.0
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 9.6e-61 238.0 269 58.7
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.5e-53 213.4 297 51.5
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 3.1e-51 206.5 309 49.5
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.2e-47 194.5 310 45.8
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 7.9e-47 191.8 297 49.2
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 5.1e-46 189.1 274 51.8
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 2.8e-44 183.3 292 48.3
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.2e-34 151.4 282 47.5
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.7e-31 140.2 397 33.8
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 6.1e-31 139.0 226 46.0
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.2e-26 124.8 421 32.1
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.6e-26 123.6 423 32.2
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.4e-24 117.9 422 31.5
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 9.4e-24 115.2 196 42.3
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.6e-23 114.4 177 45.8
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 1.6e-23 114.4 443 30.9
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.6e-23 114.4 443 30.9
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 4.7e-23 112.8 420 30.7
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 4.7e-23 112.8 135 50.4
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 6.1e-23 112.5 174 43.7
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.0e-22 111.7 447 29.8
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.8e-22 110.9 425 31.5
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.3e-22 110.5 444 31.1
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.3e-21 106.7 185 44.9
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 1.3e-20 104.8 452 29.2
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.1e-19 101.7 186 39.8
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.1e-19 101.7 190 38.9
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 3.1e-19 100.1 186 39.8
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.1e-19 99.8 430 29.3
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 9.1e-19 98.6 249 35.3
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.0e-18 97.4 184 38.6
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.0e-18 97.4 342 32.2
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 4.5e-18 96.3 339 32.7
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.0e-17 95.1 146 41.1
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.7e-17 94.4 344 29.7
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 2.2e-17 94.0 322 30.4
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.9e-17 93.6 334 29.6
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.9e-17 93.6 348 32.5
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 2.9e-17 93.6 353 31.4
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.9e-17 93.6 331 31.1
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 3.8e-17 93.2 185 37.3
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 6.5e-17 92.4 318 29.6
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 6.5e-17 92.4 188 38.8
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.1e-16 91.7 321 28.3
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.1e-16 91.7 338 30.8
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 1.9e-16 90.9 187 37.4
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.9e-16 90.9 184 37.5
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 2.5e-16 90.5 133 42.9
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 3.2e-16 90.1 351 28.8
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 9.4e-16 88.6 237 32.1
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 9.4e-16 88.6 137 43.1
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.2e-15 88.2 243 33.3
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.2e-15 88.2 160 37.5
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.6e-15 87.8 174 37.4
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.6e-15 87.8 243 33.7
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 2.1e-15 87.4 196 36.7
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 3.6e-15 86.7 178 39.3
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 6.1e-15 85.9 252 31.7
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 6.1e-15 85.9 180 35.6
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 6.1e-15 85.9 178 39.3
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 6.1e-15 85.9 246 34.1
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 8.0e-15 85.5 188 36.2
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 8.0e-15 85.5 107 46.7
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.0e-14 85.1 219 33.8
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.0e-14 85.1 164 37.2
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.0e-14 85.1 192 35.4
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.0e-14 85.1 178 39.3
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.4e-14 84.7 138 39.1
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 1.4e-14 84.7 241 37.8
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.3e-14 84.0 184 33.7
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 3.0e-14 83.6 171 38.6
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.0e-14 83.2 284 32.4
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 5.2e-14 82.8 181 36.5
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 5.2e-14 82.8 181 36.5
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 5.2e-14 82.8 273 31.9
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 5.2e-14 82.8 185 35.1
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 6.7e-14 82.4 167 36.5
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 6.7e-14 82.4 237 38.0
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 6.7e-14 82.4 181 37.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 8.8e-14 82.0 131 39.7
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 8.8e-14 82.0 333 29.1
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 2.0e-13 80.9 173 37.6
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 2.6e-13 80.5 164 36.0
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.6e-13 80.5 132 39.4
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 2.6e-13 80.5 186 34.4
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.6e-13 80.5 169 36.7
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 3.3e-13 80.1 175 34.9
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 4.4e-13 79.7 132 39.4
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 4.4e-13 79.7 132 39.4
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 4.4e-13 79.7 222 34.2
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 7.5e-13 79.0 305 28.5
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 7.5e-13 79.0 188 34.0
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 7.5e-13 79.0 194 37.6
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.7e-13 78.6 194 37.6
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 9.7e-13 78.6 200 32.5
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.3e-12 78.2 196 33.2
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.3e-12 78.2 203 33.5
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 1.3e-12 78.2 194 33.0
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.7e-12 77.8 192 32.8
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 2.2e-12 77.4 176 35.2
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 2.2e-12 77.4 235 36.2
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 3.7e-12 76.6 188 33.5
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 3.7e-12 76.6 188 33.5
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.8e-12 76.3 180 36.1
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 4.8e-12 76.3 239 33.1
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 4.8e-12 76.3 120 40.8
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 6.3e-12 75.9 252 32.5
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 8.2e-12 75.5 384 32.3
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 8.2e-12 75.5 325 28.6
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.1e-11 75.1 192 35.9
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 1.1e-11 75.1 95 47.4
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.8e-11 74.3 198 34.8
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.8e-11 74.3 181 33.1
BcaNung00969 Brassica carinata HOM05D003733 ORTHO05D004035 3.1e-11 73.6 69 63.8
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.1e-11 73.6 217 31.3
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 3.1e-11 73.6 241 29.5
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.1e-11 73.2 253 34.0
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 5.3e-11 72.8 269 32.0
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 5.3e-11 72.8 186 37.6
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 7.0e-11 72.4 182 34.6
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 1.2e-10 71.6 201 33.8
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.2e-10 71.6 247 30.8
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.6e-10 71.2 199 34.2
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 3.5e-10 70.1 233 35.2
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.5e-10 70.1 174 35.1
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 4.5e-10 69.7 330 27.0
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 5.9e-10 69.3 452 25.9
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 5.9e-10 69.3 111 37.8
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 5.9e-10 69.3 210 32.9
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.7e-09 67.8 261 32.2
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.7e-09 67.8 253 31.2
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.7e-09 67.8 248 34.3
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 2.2e-09 67.4 102 41.2
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 5.0e-09 66.2 193 32.6
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 5.0e-09 66.2 102 42.2
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 6.5e-09 65.9 179 34.1
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.5e-08 64.7 179 33.5
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 2.5e-08 63.9 266 28.2
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 2.5e-08 63.9 266 28.2
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 5.5e-08 62.8 149 33.6
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.2e-07 61.6 254 28.3
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.1e-07 60.8 97 40.2
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 2.1e-07 60.8 328 26.2
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.7e-07 60.5 230 30.9
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 4.7e-07 59.7 151 31.1
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 4.7e-07 59.7 207 28.5
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 4.7e-07 59.7 163 33.1
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.0e-06 58.5 282 26.2
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.4e-06 58.2 248 29.4
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.8e-06 57.8 202 31.7
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 2.3e-06 57.4 267 27.3
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 8.8e-06 55.5 228 27.6


User provided reference genes

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