Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 6.9e-59 230.7 142 100.0
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 1.5e-50 203.0 144 79.9
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 3.0e-46 188.7 142 73.9
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 2.0e-45 186.0 142 75.4
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 2.0e-42 176.0 142 71.1
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 2.6e-42 175.6 142 70.4
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 2.6e-42 175.6 142 70.4
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 1.7e-41 172.9 143 71.3
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 8.5e-33 144.1 143 74.8
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 1.9e-32 142.9 143 74.1
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 4.8e-28 128.3 118 61.9
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 4.8e-28 128.3 118 61.9
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 2.0e-18 96.3 78 69.2
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 5.9e-18 94.7 72 73.6
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 1.7e-17 93.2 66 78.8
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 2.3e-17 92.8 78 66.7
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 2.9e-17 92.4 79 69.6
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 2.9e-17 92.4 77 67.5
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 2.9e-17 92.4 76 68.4
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 6.5e-17 91.3 78 65.4
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 6.5e-17 91.3 80 68.8
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 6.5e-17 91.3 150 44.0
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 6.5e-17 91.3 150 44.0
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 8.6e-17 90.9 78 65.4
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 8.6e-17 90.9 74 70.3
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 8.6e-17 90.9 77 67.5
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 1.1e-16 90.5 78 65.4
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 1.5e-16 90.1 81 66.7
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 1.9e-16 89.7 78 69.2
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.9e-16 89.7 66 74.2
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 2.5e-16 89.4 72 69.4
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 2.5e-16 89.4 78 65.4
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 2.5e-16 89.4 66 74.2
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 3.3e-16 89.0 78 67.9
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 3.3e-16 89.0 78 67.9
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 3.3e-16 89.0 142 47.2
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 4.2e-16 88.6 78 67.9
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 5.5e-16 88.2 65 70.8
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 5.5e-16 88.2 78 66.7
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 7.2e-16 87.8 74 70.3
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 7.2e-16 87.8 72 72.2
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 7.2e-16 87.8 66 78.8
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 9.5e-16 87.4 64 75.0
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 9.5e-16 87.4 138 45.7
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 1.6e-15 86.7 79 64.6
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 1.6e-15 86.7 89 61.8
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.6e-15 86.7 78 65.4
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 1.6e-15 86.7 78 62.8
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 2.1e-15 86.3 67 73.1
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 2.1e-15 86.3 78 62.8
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 2.1e-15 86.3 66 71.2
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 2.1e-15 86.3 67 74.6
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 3.6e-15 85.5 76 63.2
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 3.6e-15 85.5 66 72.7
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 3.6e-15 85.5 66 72.7
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 6.1e-15 84.7 77 62.3
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 1.4e-14 83.6 79 65.8
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 2.3e-14 82.8 73 65.8
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 3.0e-14 82.4 79 64.6
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 3.0e-14 82.4 79 64.6
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 3.0e-14 82.4 73 65.8
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 5.2e-14 81.6 64 70.3
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 5.2e-14 81.6 74 67.6
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 8.9e-14 80.9 73 64.4
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 8.9e-14 80.9 69 71.0
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 2.0e-13 79.7 79 60.8
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 3.4e-13 79.0 67 70.1
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 4.4e-13 78.6 78 60.3
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 5.7e-13 78.2 84 59.5
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 5.7e-13 78.2 66 69.7
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 5.7e-13 78.2 66 69.7
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 9.8e-13 77.4 66 66.7
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 1.3e-12 77.0 66 66.7
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 2.2e-12 76.3 144 44.4
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 2.8e-12 75.9 66 63.6
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 3.7e-12 75.5 77 58.4
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 7.0e-11 71.2 61 62.3
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 2.0e-10 69.7 67 65.7
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 4.5e-10 68.6 50 70.0
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 7.8e-10 67.8 58 62.1
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 2.3e-09 66.2 63 60.3
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 2.9e-09 65.9 72 54.2
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 6.6e-09 64.7 63 57.1
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 8.6e-09 64.3 74 52.7
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 7.3e-08 61.2 71 47.9
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 4.7e-07 58.5 61 59.0
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 8.0e-07 57.8 61 54.1


User provided reference genes

Program Settings