Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 1.8e-188 662.5 351 100.0
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 1.8e-164 582.8 351 88.9
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 4.4e-163 578.2 354 87.9
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 1.2e-157 560.1 348 87.4
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 5.0e-151 538.1 350 82.3
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 2.5e-150 535.8 344 82.6
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 1.2e-144 516.9 352 80.7
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 3.6e-141 505.4 347 77.8
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 3.1e-132 475.7 353 74.5
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 4.1e-129 465.3 347 73.2
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 9.2e-129 464.2 347 72.9
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 1.1e-126 457.2 353 72.0
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 6.6e-119 431.4 340 68.2
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 3.3e-110 402.5 353 63.5
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.8e-108 396.7 334 65.9
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 8.9e-108 394.4 350 62.6
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 1.2e-107 394.0 343 63.3
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 1.5e-107 393.7 353 61.2
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 2.0e-107 393.3 343 63.0
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 7.6e-107 391.3 345 64.3
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 1.4e-105 387.1 329 64.1
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 1.4e-105 387.1 329 64.1
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 9.3e-105 384.4 342 61.7
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 2.1e-104 383.3 334 62.3
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.7e-104 382.9 334 63.8
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 3.5e-104 382.5 334 63.8
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 4.6e-104 382.1 340 60.6
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.7e-103 380.2 340 61.8
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 2.3e-103 379.8 354 60.2
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 2.3e-103 379.8 301 66.1
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 5.1e-103 378.6 338 61.5
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 1.1e-102 377.5 335 62.7
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.6e-102 375.2 343 60.6
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.6e-102 375.2 343 60.6
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.6e-102 375.2 343 60.6
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.6e-102 375.2 343 60.6
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 2.8e-101 372.9 343 60.6
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.8e-101 372.1 336 60.4
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 4.8e-101 372.1 352 58.2
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 6.2e-101 371.7 343 59.5
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 8.1e-101 371.3 341 59.2
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 1.4e-100 370.5 347 59.1
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.4e-100 370.5 345 57.4
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 1.8e-100 370.2 342 60.2
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 4.0e-100 369.0 345 57.1
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 6.9e-100 368.2 341 60.1
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 2.0e-99 366.7 365 56.7
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 2.6e-99 366.3 356 58.1
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 5.8e-99 365.2 329 62.3
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 1.3e-98 364.0 351 58.4
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.3e-98 364.0 341 58.9
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 1.7e-98 363.6 352 57.1
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 4.9e-98 362.1 344 58.1
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 2.4e-97 359.8 341 57.5
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 5.4e-97 358.6 347 58.2
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 1.2e-96 357.5 267 69.7
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 1.2e-96 357.5 329 59.3
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 2.7e-96 356.3 343 56.9
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 1.0e-95 354.4 335 58.5
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 6.6e-95 351.7 340 57.1
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 8.7e-95 351.3 342 55.6
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 8.7e-95 351.3 355 55.2
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 1.1e-94 350.9 335 57.3
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.9e-94 350.1 340 56.2
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 2.5e-94 349.7 351 55.3
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 7.3e-94 348.2 348 58.3
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 2.1e-93 346.7 352 55.4
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 2.8e-93 346.3 329 57.8
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 4.0e-92 342.4 345 57.4
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 1.3e-90 337.4 347 54.5
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 2.2e-90 336.7 345 52.8
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 5.4e-89 332.0 351 53.8
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 9.3e-89 331.3 340 51.5
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.6e-88 330.5 355 53.5
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.6e-88 330.5 383 51.7
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.6e-88 330.5 383 51.7
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 2.1e-88 330.1 358 52.8
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 3.5e-88 329.3 352 52.6
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 7.9e-88 328.2 347 53.0
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 1.8e-87 327.0 331 57.4
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 3.9e-87 325.9 360 55.3
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 7.4e-86 321.6 346 52.3
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 1.3e-85 320.9 359 54.0
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 2.1e-85 320.1 359 54.0
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 4.8e-85 318.9 339 55.8
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.1e-84 317.8 375 49.3
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 1.8e-84 317.0 347 53.0
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 4.5e-83 312.4 357 51.3
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 1.0e-82 311.2 329 52.0
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.2e-80 304.3 331 53.2
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 6.0e-80 302.0 348 51.4
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 3.9e-79 299.3 341 51.3
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 5.1e-79 298.9 324 53.1
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 8.7e-79 298.1 320 52.2
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 1.9e-78 297.0 325 58.5
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 1.1e-76 291.2 328 50.0
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.2e-72 277.7 352 47.4
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 2.3e-71 273.5 325 55.7
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 7.4e-70 268.5 340 46.5
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 2.0e-67 260.4 180 68.9
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 4.5e-67 259.2 329 48.3
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 7.7e-67 258.5 204 60.8
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 2.5e-65 253.4 303 49.2
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 3.2e-65 253.1 330 41.8
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 4.2e-65 252.7 185 67.6
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 4.2e-65 252.7 345 44.1
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 2.5e-62 243.4 324 43.2
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 3.2e-57 226.5 341 40.2
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 3.0e-55 219.9 205 62.4
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 3.9e-55 219.5 263 53.2
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 3.9e-55 219.5 331 43.2
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 6.3e-53 212.2 133 74.4
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 4.1e-52 209.5 196 53.1
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.5e-51 207.6 373 38.1
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 2.2e-45 187.2 330 39.1
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 3.7e-45 186.4 171 67.8
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 3.7e-45 186.4 128 67.2
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 8.0e-40 168.7 350 34.3
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 3.7e-37 159.8 321 37.4
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 5.0e-34 149.4 328 33.5
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 8.8e-31 138.7 254 39.8
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 3.1e-28 130.2 143 46.9
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 1.3e-26 124.8 77 80.5
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 3.3e-25 120.2 137 57.7
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 6.1e-24 115.9 88 62.5
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 3.0e-23 113.6 156 51.9
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.3e-21 108.2 70 68.6
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 7.8e-19 99.0 332 29.2
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 8.6e-18 95.5 117 49.6
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 7.5e-14 82.4 138 32.6
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 4.1e-12 76.6 140 39.3
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 4.6e-11 73.2 111 38.7
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 3.9e-10 70.1 114 31.6
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 4.4e-06 56.6 58 50.0


User provided reference genes

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