Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 6297.6 3184 100.0
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 5929.4 3189 94.5
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 5706.7 3199 90.7
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 5617.7 3201 89.4
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 5551.1 3189 88.4
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 5486.8 3198 87.5
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 5424.0 3191 86.6
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 5416.3 3191 86.5
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 5408.6 3193 86.3
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 5405.1 3195 86.3
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 5175.5 3255 81.4
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 4499.9 3200 73.6
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3628.2 3262 59.9
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3619.7 3245 60.3
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3608.9 3223 60.1
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3607.0 3257 59.8
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3595.1 3282 59.4
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3568.9 3265 59.2
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3568.5 3254 59.3
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3563.1 3254 59.1
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3555.4 3253 59.3
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3509.9 3262 58.8
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3495.3 3263 58.6
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3493.4 3261 58.4
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3487.6 3310 58.0
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3487.2 3285 57.7
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3481.0 3273 58.4
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3480.3 3261 58.0
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3466.4 3264 57.9
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3452.9 3264 57.7
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3451.4 3263 57.6
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3443.7 3262 57.6
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3431.0 3270 57.7
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3430.2 3286 57.3
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3370.5 3235 57.4
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3361.6 3244 56.8
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3351.6 3292 56.1
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3340.1 3260 56.3
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3310.4 3260 55.6
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3308.5 3251 55.8
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3305.4 3247 55.8
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3303.8 3248 56.2
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3301.1 3241 55.9
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3292.3 3257 55.7
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3288.8 3264 55.6
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3288.4 3253 56.1
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3287.7 3267 56.1
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3217.9 3393 53.3
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3217.6 3270 54.7
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3195.2 3260 54.7
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3189.4 3280 53.9
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3174.4 3279 54.1
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3162.9 2899 58.7
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3159.0 3286 53.9
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3154.0 3282 53.1
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3141.3 3279 53.7
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3137.4 3280 53.2
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3134.4 3303 53.9
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3115.1 3251 53.6
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3113.6 3297 53.0
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3095.8 3263 54.1
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3070.8 3211 53.5
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3059.2 3257 52.6
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3054.2 3265 52.8
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3051.5 3286 53.0
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3047.7 3247 53.6
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3043.8 3128 53.9
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2994.1 3291 51.9
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 2991.8 3201 52.4
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2884.0 3012 53.8
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2824.3 2709 56.7
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2768.4 2434 60.4
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2684.4 3088 50.9
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2666.3 3257 48.4
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2597.4 3245 46.8
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2579.3 2993 50.5
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2574.3 2021 66.8
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2369.7 3129 45.7
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2340.8 2461 52.1
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2123.2 2563 48.5
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2115.9 1604 69.9
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2068.1 1692 64.3
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2041.9 1987 56.5
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2020.4 3181 40.4
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1879.4 2828 42.1
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1877.8 1508 66.6
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1873.2 1469 67.8
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1868.6 2419 46.3
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1868.2 3366 37.3
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1823.9 2438 45.2
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1817.0 3374 37.1
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1797.3 1795 56.5
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1766.9 1444 66.1
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1727.6 3154 36.8
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1457.2 1006 75.0
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1375.5 2150 40.6
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1272.3 1246 55.6
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1228.8 1731 41.9
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1210.7 1548 46.6
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1177.9 1012 63.1
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1152.1 970 62.1
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1135.6 844 70.1
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1085.1 1538 42.5
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 7.4e-310 1068.9 837 67.7
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 5.3e-292 1009.6 954 59.3
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 1.8e-287 994.6 3367 27.4
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.1e-284 983.4 856 61.3
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 1.7e-282 978.0 1138 52.2
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 1.3e-274 951.8 1501 40.6
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.8e-261 907.5 885 54.6
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 2.3e-250 871.3 1495 37.3
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.5e-225 788.9 752 56.6
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 3.8e-221 774.2 1305 39.2
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-196 693.0 415 84.6
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.3e-193 681.4 442 78.3
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 1.3e-152 546.6 818 41.7
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.1e-151 543.5 804 40.2
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.8e-138 499.6 662 44.7
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.7e-136 493.0 836 37.1
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 2.2e-128 466.1 926 34.8
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 4.3e-124 451.8 328 69.2
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 1.3e-120 440.3 446 52.2
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.9e-119 436.4 250 85.2
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 4.6e-118 431.8 270 79.3
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 5.2e-114 418.3 409 56.5
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 5.1e-109 401.7 529 46.7
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-101 377.1 302 67.5
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.2e-97 364.0 817 32.1
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 3.4e-97 362.5 823 33.5
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.3e-96 360.5 568 42.8
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 1.1e-95 357.5 825 32.1
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 1.2e-89 337.4 414 46.6
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-89 337.4 244 68.0
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 2.0e-89 336.7 218 79.8
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 2.5e-87 329.7 247 64.4
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 7.9e-86 324.7 457 40.9
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 5.7e-84 318.5 333 55.9
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 6.3e-83 315.1 307 56.7
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 6.9e-82 311.6 353 49.3
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 3.4e-81 309.3 876 29.1
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 4.2e-79 302.4 840 28.8
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 1.8e-77 297.0 623 32.9
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 6.3e-75 288.5 326 50.9
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 3.4e-73 282.7 290 53.8
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 3.3e-68 266.2 773 28.7
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.2e-65 257.7 680 29.3
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.5e-65 255.8 960 26.8
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 5.5e-63 248.8 329 43.8
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 4.1e-58 232.6 155 73.5
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.5e-47 197.6 390 34.4
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 7.5e-44 185.3 213 50.2
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 4.0e-37 162.9 484 26.9
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 7.3e-31 142.1 119 64.7
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 1.7e-27 131.0 96 66.7
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 1.6e-25 124.4 83 73.5
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 1.1e-23 118.2 115 51.3
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 3.1e-21 110.2 85 63.5
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.5e-20 107.8 100 62.0
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.5e-20 107.8 72 77.8
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 2.0e-20 107.5 81 69.1
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 7.5e-20 105.5 70 74.3
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 6.4e-19 102.4 109 52.3
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.4e-18 101.3 111 47.7
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.4e-13 84.7 130 37.7
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.0e-12 80.9 93 44.1
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 7.5e-12 79.0 60 60.0
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.9e-10 74.3 69 55.1
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 4.1e-10 73.2 59 59.3
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 4.6e-09 69.7 49 73.5
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 3.9e-08 66.6 45 73.3
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 1.2e-06 61.6 90 40.0


User provided reference genes

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