Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G11380 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 3.4e-71 271.6 135 100.0
AL7G10400 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.6e-65 252.7 159 83.0
AL8G23230 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 2.3e-64 248.8 159 81.8
AL2G41610 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 8.9e-64 246.9 159 81.8
AL5G17660 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 3.4e-63 245.0 159 81.8
AL3G42160 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 9.8e-63 243.4 156 81.4
AL1G32470 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 2.4e-61 238.8 150 83.3
AT1G19740 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 2.4e-61 238.8 150 83.3
Carub.0001s1929 Capsella rubella HOM05D004346 ORTHO05D005153 2.4e-61 238.8 150 83.3
Thhalv10008437m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 2.4e-61 238.8 150 83.3
Sp1g17580 Schrenkiella parvula HOM05D004346 ORTHO05D005153 2.4e-61 238.8 150 83.3
CARHR020270 Cardamine hirsuta HOM05D004346 ORTHO05D005153 7.0e-61 237.3 150 82.0
A06p15850 Brassica napus HOM05D004346 ORTHO05D005153 1.2e-60 236.5 150 81.3
BraA06t24697Z Brassica rapa HOM05D004346 ORTHO05D005153 1.2e-60 236.5 150 81.3
BolC5t30525H Brassica oleracea HOM05D004346 ORTHO05D005153 1.6e-60 236.1 151 80.8
C05p18170 Brassica napus HOM05D004346 ORTHO05D005153 4.6e-60 234.6 151 80.1
Aa31LG4G5700 Aethionema arabicum HOM05D004346 ORTHO05D005153 5.6e-58 227.6 150 78.0
CARHR068870 Cardamine hirsuta HOM05D004346 ORTHO05D005153 3.6e-57 224.9 150 76.0
AT1G75460 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 8.0e-57 223.8 150 75.3
Sp5g30610 Schrenkiella parvula HOM05D004346 ORTHO05D005153 8.0e-57 223.8 150 76.7
THA.LOC104813810 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 8.0e-57 223.8 150 75.3
A02p19950 Brassica napus HOM05D004346 ORTHO05D005153 1.4e-56 223.0 150 76.0
BraA02t07032Z Brassica rapa HOM05D004346 ORTHO05D005153 1.4e-56 223.0 150 76.0
BcaB05g24908 Brassica carinata HOM05D004346 ORTHO05D005153 1.8e-56 222.6 150 76.0
C02p32610 Brassica napus HOM05D004346 ORTHO05D005153 1.8e-56 222.6 150 75.3
Carub.0002s2234 Capsella rubella HOM05D004346 ORTHO05D005153 4.0e-56 221.5 150 74.0
AL2G35430 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 5.2e-56 221.1 150 74.7
BolC2t09292H Brassica oleracea HOM05D004346 ORTHO05D005153 5.2e-56 221.1 150 75.3
Thhalv10019638m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 6.8e-56 220.7 150 75.3
BcaC03g15576 Brassica carinata HOM05D004346 ORTHO05D005153 1.2e-55 219.9 150 74.7
BcaB07g31988 Brassica carinata HOM05D004346 ORTHO05D005153 1.5e-55 219.5 145 78.6
THA.LOC104809066 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 3.7e-54 214.9 150 74.0
TWI56G1281 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 5.4e-53 211.1 150 73.3
Atru.chr13.385 Acer truncatum HOM05D004346 ORTHO05D005153 6.0e-52 207.6 150 71.3
COL.COLO4_26227 Corchorus olitorius HOM05D004346 ORTHO05D005153 1.0e-51 206.8 150 71.3
Duzib093G0381 Durio zibethinus HOM05D004346 ORTHO05D005153 1.7e-51 206.1 150 71.3
TWI36G0841 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 1.7e-51 206.1 150 70.7
CiPaw.07G155800 Carya illinoinensis HOM05D004346 ORTHO05D005153 2.3e-51 205.7 152 71.7
ClCG05G018660 Citrullus lanatus HOM05D004346 ORTHO05D005153 2.3e-51 205.7 152 71.7
Ciclev10002101m.g Citrus clementina HOM05D004346 ORTHO05D005153 2.3e-51 205.7 150 71.3
MELO3C003788.2 Cucumis melo HOM05D004346 ORTHO05D005153 2.3e-51 205.7 152 71.7
Duzib116G0866 Durio zibethinus HOM05D004346 ORTHO05D005153 2.3e-51 205.7 150 70.7
Cpa.g.sc698.2 Carica papaya HOM05D004346 ORTHO05D005153 3.0e-51 205.3 150 71.3
Potri.002G029900 Populus trichocarpa HOM05D004346 ORTHO05D005153 3.0e-51 205.3 149 70.5
Manes.18G022200 Manihot esculenta HOM05D004346 ORTHO05D005153 5.0e-51 204.5 150 70.0
QL02p010362 Quercus lobata HOM05D004346 ORTHO05D005153 5.0e-51 204.5 152 71.1
Thecc.08G035100 Theobroma cacao HOM05D004346 ORTHO05D005153 5.0e-51 204.5 150 70.7
Cfa013888 Carpinus fangiana HOM05D004346 ORTHO05D005153 6.6e-51 204.1 152 71.1
Haze_22565 Corylus avellana HOM05D004346 ORTHO05D005153 6.6e-51 204.1 152 71.1
RcHm_v2.0_Chr6g0301881 Rosa chinensis HOM05D004346 ORTHO05D005153 6.6e-51 204.1 152 71.7
CANSAT25G3810 Cannabis sativa HOM05D004346 ORTHO05D005153 1.1e-50 203.4 151 70.9
CsaV3_3G045520 Cucumis sativus L. HOM05D004346 ORTHO05D005153 1.5e-50 203.0 152 71.1
FAN15G2637 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.5e-50 203.0 152 71.1
Prupe.1G372600 Prunus persica HOM05D004346 ORTHO05D005153 1.5e-50 203.0 152 71.1
Sed0026661 Sechium edule HOM05D004346 ORTHO05D009095 1.9e-50 202.6 152 71.1
FAN27G0767 Fragaria x ananassa HOM05D004346 ORTHO05D005153 3.3e-50 201.8 152 71.1
MD08G1023400 Malus domestica HOM05D004346 ORTHO05D005153 3.3e-50 201.8 152 70.4
Sabra02G0023800 Salix brachista HOM05D004346 ORTHO05D005153 3.3e-50 201.8 149 69.1
Potri.005G232800 Populus trichocarpa HOM05D004346 ORTHO05D005153 5.6e-50 201.1 149 69.8
Sed0026579 Sechium edule HOM05D004346 ORTHO05D005153 5.6e-50 201.1 152 71.1
Duzib041G0460 Durio zibethinus HOM05D004346 ORTHO05D005153 1.2e-49 199.9 150 68.7
FvH4_2g39180 Fragaria vesca HOM05D004346 ORTHO05D005153 1.2e-49 199.9 152 70.4
FAN20G0669 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.2e-49 199.9 152 69.7
Nn1g05970 Nelumbo nucifera HOM05D004346 ORTHO05D005153 1.2e-49 199.9 151 68.9
Cc10_g02310 Coffea canephora HOM05D004346 ORTHO05D005153 3.6e-49 198.4 151 68.9
Gohir.A05G189500 Gossypium hirsutum HOM05D004346 ORTHO05D005153 4.7e-49 198.0 149 67.8
Gohir.D05G192800 Gossypium hirsutum HOM05D004346 ORTHO05D005153 4.7e-49 198.0 149 67.8
Gorai.009G198000 Gossypium raimondii HOM05D004346 ORTHO05D005153 4.7e-49 198.0 149 67.8
MBI01_g12679_MAGBIO Magnolia biondii HOM05D004346 ORTHO05D005153 4.7e-49 198.0 149 68.5
MD15G1020800 Malus domestica HOM05D004346 ORTHO05D005153 8.1e-49 197.2 152 68.4
CSS0003618 Camellia sinensis var. sinensis HOM05D004346 ORTHO05D005153 1.1e-48 196.8 151 68.9
Dinv39468 Davidia involucrata HOM05D004346 ORTHO05D005153 1.1e-48 196.8 151 68.9
Eucgr.F01853 Eucalyptus grandis HOM05D004346 ORTHO05D005153 1.1e-48 196.8 151 68.2
Nn5g29149 Nelumbo nucifera HOM05D004346 ORTHO05D005153 1.4e-48 196.4 151 68.2
MSTRG.24272 Avicennia marina HOM05D004346 ORTHO05D005153 1.8e-48 196.1 150 69.3
CiPaw.08G061400 Carya illinoinensis HOM05D004346 ORTHO05D005153 1.8e-48 196.1 152 69.1
Lalb_Chr23g0266421 Lupinus albus HOM05D004346 ORTHO05D005153 1.8e-48 196.1 160 66.9
Dinv31796 Davidia involucrata HOM05D004346 ORTHO05D005153 2.3e-48 195.7 151 68.2
Thhalv10027193m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 2.3e-48 195.7 135 73.3
Eucgr.F01605 Eucalyptus grandis HOM05D004346 ORTHO05D005153 3.1e-48 195.3 152 67.8
Lj1g0013800 Lotus japonicus HOM05D004346 ORTHO05D005153 4.0e-48 194.9 152 67.8
Migut.N03118 Erythranthe guttata HOM05D004346 ORTHO05D005153 5.2e-48 194.5 151 68.9
Lsat_1_v5_gn_5_25761 Lactuca sativa HOM05D004346 ORTHO05D005153 5.2e-48 194.5 150 68.0
Sopen04g034450 Solanum pennellii HOM05D004346 ORTHO05D005153 5.2e-48 194.5 151 67.5
PGSC0003DMG400003704 Solanum tuberosum HOM05D004346 ORTHO05D005153 5.2e-48 194.5 151 67.5
DCAR_009955 Daucus carota HOM05D004346 ORTHO05D005153 6.8e-48 194.1 150 67.3
Nitab4.5_0002156g0110 Nicotiana tabacum HOM05D004346 ORTHO05D005153 8.9e-48 193.7 151 66.9
Mapoly0123s0028 Marchantia polymorpha HOM05D004346 ORTHO05D005153 1.2e-47 193.4 151 68.2
Nitab4.5_0001861g0130 Nicotiana tabacum HOM05D004346 ORTHO05D005153 1.2e-47 193.4 150 67.3
Ca_02070_v3 Cicer arietinum L. HOM05D004346 ORTHO05D005153 1.5e-47 193.0 152 66.4
Oeu030608.1 Olea europaea HOM05D004346 ORTHO05D005153 1.5e-47 193.0 151 66.2
arahy.Tifrunner.gnm1.ann1.FS02K0 Arachis hypogaea HOM05D004346 ORTHO05D005153 2.0e-47 192.6 153 66.7
Phvul.009G012900 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 2.0e-47 192.6 152 67.1
TPR.G12390 Trifolium pratense HOM05D004346 ORTHO05D005153 2.0e-47 192.6 152 67.1
unitig_21.g20157 Utricularia gibba HOM05D004346 ORTHO05D005153 2.0e-47 192.6 150 67.3
VMungo1309G1438 Vigna mungo HOM05D004346 ORTHO05D005153 2.0e-47 192.6 152 67.1
TAR068G0006 Trochodendron aralioides HOM05D004346 ORTHO05D005153 3.4e-47 191.8 152 67.1
Aqoxy6G01229 Aquilegia oxysepala HOM05D004346 ORTHO05D005153 4.4e-47 191.4 151 64.9
CAN.G851.33 Capsicum annuum HOM05D004346 ORTHO05D005153 4.4e-47 191.4 151 66.2
Glyma.04G028400 Glycine max HOM05D004346 ORTHO05D005153 4.4e-47 191.4 152 65.8
Gohir.A06G006700 Gossypium hirsutum HOM05D004346 ORTHO05D005153 4.4e-47 191.4 151 67.5
Medtr3g112420 Medicago truncatula HOM05D004346 ORTHO05D005153 4.4e-47 191.4 152 65.1
Oeu030408.1 Olea europaea HOM05D004346 ORTHO05D005153 4.4e-47 191.4 152 65.8
Actinidia22506 Actinidia chinensis HOM05D004346 ORTHO05D005153 5.8e-47 191.0 151 66.2
Gohir.D06G002460 Gossypium hirsutum HOM05D004346 ORTHO05D005153 5.8e-47 191.0 151 66.9
Gorai.002G126100 Gossypium raimondii HOM05D004346 ORTHO05D005153 5.8e-47 191.0 150 65.3
SalBow8G0366 Salvia bowleyana HOM05D004346 ORTHO05D005153 5.8e-47 191.0 151 67.5
SalBow8G2486 Salvia bowleyana HOM05D004346 ORTHO05D005153 5.8e-47 191.0 151 67.5
Gorai.010G007200 Gossypium raimondii HOM05D004346 ORTHO05D005153 7.5e-47 190.7 151 66.9
Lj4C32T10 Lonicera japonica HOM05D004346 ORTHO05D005153 7.5e-47 190.7 151 66.2
PSO541G5233 Papaver somniferum HOM05D004346 ORTHO05D005153 7.5e-47 190.7 152 65.1
PSO675G8115 Papaver somniferum HOM05D004346 ORTHO05D005153 7.5e-47 190.7 152 65.1
Psat0s471g0440 Pisum sativum HOM05D004346 ORTHO05D005153 9.8e-47 190.3 152 65.8
Glyma.06G028500 Glycine max HOM05D004346 ORTHO05D005153 1.7e-46 189.5 152 65.8
Gohir.D01G101600 Gossypium hirsutum HOM05D004346 ORTHO05D005153 1.7e-46 189.5 149 65.1
Thhalv10029286m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 2.2e-46 189.1 135 71.9
Glyma.14G070400 Glycine max HOM05D004346 ORTHO05D005153 2.2e-46 189.1 155 63.9
Phvul.001G010700 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 2.2e-46 189.1 152 65.1
TAR376G0822 Trochodendron aralioides HOM05D004346 ORTHO05D005153 2.2e-46 189.1 150 64.7
VMungo0647G1706 Vigna mungo HOM05D004346 ORTHO05D005153 2.9e-46 188.7 152 65.1
SGA_v2.0_scaffold326G48739 Striga asiatica HOM05D004346 ORTHO05D005153 3.7e-46 188.3 151 64.2
ECA232G0130 Erigeron canadensis HOM05D004346 ORTHO05D005153 8.3e-46 187.2 153 64.1
unitig_22.g6787 Utricularia gibba HOM05D004346 ORTHO05D005153 1.9e-45 186.0 154 64.3
ATR0680G160 Amborella trichopoda HOM05D004346 ORTHO05D005153 4.1e-45 184.9 151 64.2
Ah.10g035530 Amaranthus hybridus HOM05D004346 ORTHO05D005153 5.4e-45 184.5 153 60.1
Pp3c2_28030 Physcomitrium patens HOM05D004346 ORTHO05D005153 5.4e-45 184.5 151 65.6
Rhsim06G0027900 Rhododendron simsii HOM05D004346 ORTHO05D005153 5.4e-45 184.5 151 63.6
AUR62034542 Chenopodium quinoa HOM05D004346 ORTHO05D005153 7.1e-45 184.1 154 62.3
HPP92_007934 Vanilla planifolia HOM05D004346 ORTHO05D005153 1.0e-43 180.3 160 58.8
Sc15g0007210 Simmondsia chinensis HOM05D004346 ORTHO05D005153 1.3e-43 179.9 151 63.6
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 1.7e-43 179.5 151 61.6
CBR_g8224 Chara braunii HOM05D004346 ORTHO05D005153 3.9e-43 178.3 151 61.6
SMO340G0026 Selaginella moellendorffii HOM05D004346 ORTHO05D005153 5.1e-43 177.9 158 60.1
Os07g0509700 Oryza sativa ssp. japonica HOM05D004346 ORTHO05D005153 1.9e-42 176.0 155 59.4
SEGI_26379 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 1.9e-42 176.0 151 60.9
Zm00001eb105790 Zea mays HOM05D004346 ORTHO05D005153 7.3e-42 174.1 155 60.0
Zm00001eb322430 Zea mays HOM05D004346 ORTHO05D005153 1.6e-41 172.9 155 60.0
CDE03G0026 Ceratophyllum demersum HOM05D004346 ORTHO05D005153 4.1e-37 158.3 127 63.8
Nn5g30640 Nelumbo nucifera HOM05D004346 ORTHO05D005153 1.6e-36 156.4 126 62.7
CBR_g51048 Chara braunii HOM05D004346 ORTHO05D005153 5.1e-35 151.4 161 51.6
Zm00001eb380450 Zea mays HOM05D004346 ORTHO05D005153 1.9e-34 149.4 139 58.3
FAN09G3639 Fragaria x ananassa HOM05D004346 ORTHO05D005153 7.3e-34 147.5 91 80.2
FAN03G3294 Fragaria x ananassa HOM05D004346 ORTHO05D005153 2.1e-33 146.0 91 79.1
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 3.6e-33 145.2 91 79.1
LjContig00412g0021689 Lotus japonicus HOM05D004346 ORTHO05D005153 8.9e-32 140.6 84 78.6
Lj3g0013855 Lotus japonicus HOM05D004346 ORTHO05D005153 5.8e-31 137.9 84 77.4
FAN21G1121 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.4e-29 133.3 91 75.8
AagrBONN_evm.TU.Sc2ySwM_117.454 Anthoceros agrestis HOM05D004346 ORTHO05D005153 2.4e-29 132.5 91 67.0
VMungo1383G2745 Vigna mungo HOM05D003359 ORTHO05D005153 1.7e-27 126.3 84 72.6
FAN17G2329 Fragaria x ananassa HOM05D004346 ORTHO05D005153 3.0e-27 125.6 77 80.5
Peaxi162Scf00189g00121 Petunia axillaris HOM05D004346 ORTHO05D005153 3.1e-24 115.5 102 62.7
Actinidia15370 Actinidia chinensis HOM05D004346 ORTHO05D005153 3.4e-23 112.1 143 50.3
Os03g0409100 Oryza sativa ssp. japonica HOM05D004346 ORTHO05D005153 8.1e-17 90.9 160 41.2
FAN13G0889 Fragaria x ananassa HOM05D004346 ORTHO05D005153 4.5e-15 85.1 50 80.0
Zm00001eb019650 Zea mays HOM05D004346 ORTHO05D005153 4.5e-15 85.1 153 38.6
FAN07G0972 Fragaria x ananassa HOM05D002863 ORTHO05D005691 7.6e-15 84.3 50 84.0
Solyc04g080870.1 Solanum lycopersicum HOM05D004346 ORTHO05D005153 8.7e-11 70.9 36 91.7
Gohir.A01G113800 Gossypium hirsutum HOM05D004346 ORTHO05D005153 3.3e-10 68.9 52 67.3
Medtr3g037230 Medicago truncatula HOM05D000041 ORTHO05D006140 4.0e-08 62.0 131 30.5
Cre02.g141550 Chlamydomonas reinhardtii HOM05D004346 ORTHO05D005153 1.5e-07 60.1 146 34.2
CiPaw.11G047400 Carya illinoinensis HOM05D000041 ORTHO05D006140 3.4e-07 58.9 160 28.8
Pp3c15_14620 Physcomitrium patens HOM05D000041 ORTHO05D006140 4.5e-07 58.5 89 39.3


User provided reference genes

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