Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 2.9e-41 171.8 109 100.0
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 5.3e-35 151.0 108 81.5
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 5.3e-35 151.0 108 81.5
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 2.0e-34 149.1 108 89.8
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 2.7e-34 148.7 108 86.1
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 6.5e-33 144.1 109 87.2
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 6.5e-33 144.1 109 87.2
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 1.1e-32 143.3 98 95.9
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 2.5e-32 142.1 109 89.9
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 5.5e-32 141.0 110 86.4
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 5.5e-32 141.0 109 88.1
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 9.4e-32 140.2 111 86.5
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 1.2e-31 139.8 109 87.2
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 1.2e-31 139.8 109 87.2
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 1.6e-31 139.4 110 86.4
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 1.0e-17 93.6 100 49.0
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 5.0e-17 91.3 108 46.3
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 4.3e-16 88.2 109 48.6
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 4.3e-16 88.2 109 48.6
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 9.5e-16 87.0 108 45.4
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 1.2e-15 86.7 108 46.3
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 1.6e-15 86.3 99 47.5
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.6e-15 85.1 101 46.5
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 4.7e-15 84.7 109 46.8
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 6.1e-15 84.3 99 45.5
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 8.0e-15 84.0 100 48.0
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 3.0e-14 82.0 104 47.1
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 8.9e-14 80.5 106 42.5
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 1.5e-13 79.7 109 43.1
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 2.0e-13 79.3 46 78.3
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 2.6e-13 79.0 44 79.5
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 3.4e-13 78.6 100 42.0
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 3.4e-13 78.6 100 42.0
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 5.8e-13 77.8 101 43.6
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 5.8e-13 77.8 100 45.0
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 9.8e-13 77.0 99 42.4
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 9.8e-13 77.0 101 43.6
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.7e-12 76.3 114 43.0
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 1.7e-12 76.3 109 41.3
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.2e-12 75.9 114 43.0
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.9e-12 75.5 108 42.6
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 2.9e-12 75.5 108 43.5
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 3.7e-12 75.1 114 43.0
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.7e-12 75.1 114 43.0
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.7e-12 75.1 114 43.0
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 3.7e-12 75.1 99 41.4
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 3.7e-12 75.1 109 41.3
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 4.9e-12 74.7 107 42.1
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 4.9e-12 74.7 106 38.7
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 6.4e-12 74.3 100 41.0
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 1.4e-11 73.2 99 41.4
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 1.4e-11 73.2 99 41.4
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 1.9e-11 72.8 40 82.5
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 1.6e-10 69.7 106 36.8
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 2.0e-10 69.3 112 40.2
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 2.0e-10 69.3 101 43.6
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 3.5e-10 68.6 50 66.0
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 7.8e-10 67.4 101 42.6
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.3e-09 66.6 97 40.2
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 1.3e-09 66.6 50 64.0
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 1.7e-09 66.2 100 42.0
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 2.3e-09 65.9 107 36.4
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 3.9e-09 65.1 100 41.0
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 3.9e-09 65.1 49 59.2
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 8.6e-09 63.9 49 57.1
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 1.1e-08 63.5 109 35.8
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 1.1e-08 63.5 49 55.1
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.5e-08 63.2 43 69.8
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.5e-08 63.2 43 69.8
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 1.9e-08 62.8 43 65.1
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 2.5e-08 62.4 41 68.3
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 4.3e-08 61.6 42 69.0
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 4.3e-08 61.6 41 68.3
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 5.6e-08 61.2 50 58.0
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 7.3e-08 60.8 44 56.8
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 1.6e-07 59.7 46 52.2
SEGI_14454 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 1.6e-07 59.7 56 48.2
SEGI_32080 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 1.6e-07 59.7 49 51.0
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 3.6e-07 58.5 41 53.7
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 3.6e-07 58.5 43 60.5
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 3.6e-07 58.5 41 56.1
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 4.7e-07 58.2 49 53.1
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 6.2e-07 57.8 43 62.8
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 6.2e-07 57.8 49 53.1
Nn4g24832 Nelumbo nucifera HOM05D002019 ORTHO05D002150 6.2e-07 57.8 49 51.0
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 1.1e-06 57.0 45 53.3
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 1.1e-06 57.0 44 56.8
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 1.1e-06 57.0 51 52.9
CDE05G2539 Ceratophyllum demersum HOM05D002019 ORTHO05D002150 1.4e-06 56.6 45 57.8
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 1.8e-06 56.2 45 55.6
Zm00001eb353580 Zea mays HOM05D002019 ORTHO05D010005 1.8e-06 56.2 42 57.1
Actinidia40403 Actinidia chinensis HOM05D002019 ORTHO05D002150 2.3e-06 55.8 46 52.2
Cfa003163 Carpinus fangiana HOM05D002019 ORTHO05D002150 2.3e-06 55.8 48 54.2
Lj4P371T13 Lonicera japonica HOM05D002019 ORTHO05D002150 2.3e-06 55.8 49 49.0
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 2.3e-06 55.8 46 54.3
MSTRG.15624 Avicennia marina HOM05D002019 ORTHO05D002150 3.1e-06 55.5 46 50.0
Cpa.g.sc25.25 Carica papaya HOM05D002019 ORTHO05D002150 3.1e-06 55.5 47 53.2
CiPaw.03G078600 Carya illinoinensis HOM05D002019 ORTHO05D002150 3.1e-06 55.5 45 55.6
Nitab4.5_0004673g0030 Nicotiana tabacum HOM05D002019 ORTHO05D002150 3.1e-06 55.5 50 48.0
TAR383G0675 Trochodendron aralioides HOM05D002019 ORTHO05D002150 3.1e-06 55.5 45 53.3
Aqoxy3G04192 Aquilegia oxysepala HOM05D002019 ORTHO05D002150 4.0e-06 55.1 45 51.1
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 4.0e-06 55.1 37 67.6
Dinv36721 Davidia involucrata HOM05D002019 ORTHO05D002150 4.0e-06 55.1 49 51.0
Lalb_Chr14g0371961 Lupinus albus HOM05D002019 ORTHO05D002150 4.0e-06 55.1 45 51.1
SEGI_27843 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 4.0e-06 55.1 49 46.9
GSVIVG01035279001 Vitis vinifera HOM05D002019 ORTHO05D002150 4.0e-06 55.1 45 53.3
ATR0705G013 Amborella trichopoda HOM05D002019 ORTHO05D002150 5.2e-06 54.7 46 50.0
Lsat_1_v5_gn_3_69461 Lactuca sativa HOM05D002019 ORTHO05D002150 5.2e-06 54.7 46 47.8
Nitab4.5_0001242g0140 Nicotiana tabacum HOM05D002019 ORTHO05D002150 5.2e-06 54.7 50 48.0
PSO210G7738 Papaver somniferum HOM05D002019 ORTHO05D002150 5.2e-06 54.7 47 48.9
Psat1g050120 Pisum sativum HOM05D002019 ORTHO05D002150 5.2e-06 54.7 45 51.1
Psat7g018040 Pisum sativum HOM05D002019 ORTHO05D002150 5.2e-06 54.7 47 48.9
Cfa007741 Carpinus fangiana HOM05D002019 ORTHO05D002150 6.8e-06 54.3 45 53.3
DCAR_014138 Daucus carota HOM05D002019 ORTHO05D002150 6.8e-06 54.3 46 52.2
HanXRQChr16g0532381 Helianthus annuus HOM05D002019 ORTHO05D002150 6.8e-06 54.3 55 43.6
Oeu012515.1 Olea europaea HOM05D002019 ORTHO05D002150 6.8e-06 54.3 45 53.3
PSO210G7250 Papaver somniferum HOM05D002019 ORTHO05D002150 6.8e-06 54.3 47 48.9
TWI74G0642 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 6.8e-06 54.3 41 58.5
Cc04_g02460 Coffea canephora HOM05D002019 ORTHO05D002150 8.9e-06 53.9 45 53.3


User provided reference genes

Program Settings