Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 4.9e-60 235.3 246 100.0
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 1.4e-22 110.9 247 76.1
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 3.1e-22 109.8 247 76.9
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 4.0e-22 109.4 248 76.6
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 2.9e-20 103.2 246 76.0
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 4.9e-20 102.4 246 76.0
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 8.4e-20 101.7 240 77.1
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 8.4e-20 101.7 240 77.1
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 1.1e-19 101.3 243 76.5
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 1.4e-19 100.9 248 75.4
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 1.9e-19 100.5 239 75.3
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 2.4e-19 100.1 246 75.2
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 3.2e-19 99.8 241 75.1
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 4.2e-19 99.4 239 77.0
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 2.1e-18 97.1 258 70.9
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 4.6e-18 95.9 241 73.4
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 6.0e-18 95.5 256 73.4
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 1.0e-17 94.7 231 76.2
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 1.3e-17 94.4 244 75.4
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.3e-17 94.4 245 73.1
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.3e-17 94.4 258 70.5
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 3.0e-17 93.2 246 72.4
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 3.9e-17 92.8 242 73.6
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 5.1e-17 92.4 247 73.3
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 6.7e-17 92.0 248 71.8
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 8.7e-17 91.7 248 72.2
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.1e-16 91.3 246 72.8
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 1.1e-16 91.3 244 72.1
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.5e-16 90.9 196 85.7
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 1.5e-16 90.9 246 72.4
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 4.3e-16 89.4 263 70.0
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 5.6e-16 89.0 249 70.3
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 9.6e-16 88.2 245 71.4
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 4.8e-15 85.9 251 69.7
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 4.8e-15 85.9 262 71.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 8.1e-15 85.1 253 69.2
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.1e-14 84.7 249 61.0
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.4e-14 84.3 227 72.7
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 2.4e-14 83.6 217 71.4
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 9.0e-14 81.6 247 71.7
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 9.0e-14 81.6 246 61.4
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 3.4e-13 79.7 250 70.4
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 2.9e-12 76.6 238 69.3
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 3.8e-12 76.3 211 59.7
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 6.4e-12 75.5 210 74.3
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.4e-11 73.6 48 72.9
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 4.2e-11 72.8 49 67.3
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.5e-11 72.4 60 66.7
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.5e-11 72.4 209 75.6
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 7.1e-11 72.0 62 59.7
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 7.1e-11 72.0 50 68.0
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 9.3e-11 71.6 48 70.8
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 9.3e-11 71.6 68 58.8
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.2e-10 71.2 64 57.8
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.2e-10 71.2 48 68.8
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.6e-10 70.9 54 63.0
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 1.6e-10 70.9 235 72.8
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.6e-10 70.9 204 75.0
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 2.7e-10 70.1 48 66.7
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 3.5e-10 69.7 49 65.3
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 3.5e-10 69.7 48 66.7
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 6.0e-10 68.9 64 56.2
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 6.0e-10 68.9 48 66.7
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 6.0e-10 68.9 48 66.7
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 7.9e-10 68.6 49 65.3
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.8e-09 67.4 54 57.4
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 2.3e-09 67.0 62 58.1
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 3.0e-09 66.6 50 62.0
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 3.0e-09 66.6 48 64.6
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 3.0e-09 66.6 50 62.0
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 3.0e-09 66.6 50 62.0
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 3.9e-09 66.2 54 59.3
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 3.9e-09 66.2 48 64.6
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 5.1e-09 65.9 47 66.0
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 5.1e-09 65.9 50 60.0
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 8.7e-09 65.1 52 61.5
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 8.7e-09 65.1 48 60.4
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 1.1e-08 64.7 52 61.5
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 1.1e-08 64.7 52 61.5
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.1e-08 64.7 51 62.7
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 1.5e-08 64.3 60 60.0
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.5e-08 64.3 51 62.7
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.5e-08 64.3 51 62.7
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.5e-08 64.3 51 62.7
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.5e-08 64.3 51 62.7
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.5e-08 64.3 50 62.0
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 2.5e-08 63.5 48 60.4
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 3.3e-08 63.2 50 60.0
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 3.3e-08 63.2 55 56.4
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 4.3e-08 62.8 49 61.2
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 4.3e-08 62.8 49 61.2
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 5.6e-08 62.4 43 62.8
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 5.6e-08 62.4 43 62.8
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 9.6e-08 61.6 58 58.6
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 1.3e-07 61.2 51 60.8
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.3e-07 61.2 50 58.0
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.6e-07 60.8 64 54.7
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 2.8e-07 60.1 47 63.8
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 2.8e-07 60.1 46 56.5
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 3.7e-07 59.7 47 63.8
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 3.7e-07 59.7 53 52.8
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 3.7e-07 59.7 53 52.8
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 8.1e-07 58.5 52 57.7
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.1e-06 58.2 43 62.8
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 1.1e-06 58.2 55 49.1
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.4e-06 57.8 55 49.1
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 1.8e-06 57.4 44 61.4
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 4.0e-06 56.2 43 60.5
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 5.3e-06 55.8 47 55.3
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 6.9e-06 55.5 56 50.0
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 6.9e-06 55.5 50 52.0
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 9.0e-06 55.1 54 48.1
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 9.0e-06 55.1 54 48.1
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 9.0e-06 55.1 44 56.8


User provided reference genes

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