Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.4e-145 519.6 267 100.0
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 3.3e-139 498.4 268 96.3
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.7e-138 496.1 267 95.1
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 2.2e-135 485.7 267 93.3
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 3.6e-133 478.4 265 92.1
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 2.0e-128 462.6 267 89.9
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 3.8e-127 458.4 301 80.1
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 9.4e-126 453.8 267 88.0
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 1.2e-125 453.4 281 85.4
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 6.1e-125 451.1 267 88.4
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 6.1e-125 451.1 280 85.0
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 1.8e-124 449.5 267 87.3
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 4.0e-124 448.4 267 85.0
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 9.2e-113 410.6 267 84.6
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.4e-105 386.7 267 70.4
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 1.6e-104 383.3 267 72.3
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 2.7e-104 382.5 265 69.4
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 3.5e-104 382.1 267 70.8
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 3.5e-104 382.1 267 70.8
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 6.0e-104 381.3 267 71.2
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 7.8e-104 380.9 267 71.5
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.0e-103 380.6 267 70.0
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.3e-103 380.2 268 69.4
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 3.0e-103 379.0 265 70.9
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 3.9e-103 378.6 267 69.3
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 5.0e-103 378.3 267 70.4
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 1.5e-102 376.7 267 70.8
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 1.9e-102 376.3 267 70.8
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 3.3e-102 375.6 267 70.0
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 3.3e-102 375.6 267 69.3
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 9.5e-102 374.0 267 69.7
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 9.5e-102 374.0 267 69.3
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.2e-101 373.6 266 69.5
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 1.2e-101 373.6 267 68.5
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 8.1e-101 370.9 267 67.4
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 8.1e-101 370.9 267 67.4
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.1e-100 370.5 267 67.4
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 1.4e-100 370.2 267 68.5
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 1.4e-100 370.2 267 68.2
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.8e-100 369.8 258 70.9
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 2.3e-100 369.4 265 68.7
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 3.1e-100 369.0 266 68.8
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 4.0e-100 368.6 267 69.3
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 4.0e-100 368.6 267 67.0
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 1.2e-99 367.1 237 76.8
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 1.5e-99 366.7 267 66.7
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 2.0e-99 366.3 268 67.9
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 5.8e-99 364.8 268 66.0
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 9.8e-99 364.0 245 71.8
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 1.3e-98 363.6 267 68.5
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.7e-98 363.2 267 65.5
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 1.7e-98 363.2 245 71.8
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 2.2e-98 362.8 265 68.7
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 2.9e-98 362.5 267 68.5
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 4.9e-98 361.7 266 66.2
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 6.4e-98 361.3 287 65.5
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 6.4e-98 361.3 267 68.2
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 8.3e-98 360.9 266 68.4
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 2.4e-97 359.4 243 71.6
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 2.4e-97 359.4 255 68.6
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 3.2e-97 359.0 267 64.8
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 4.1e-97 358.6 268 66.4
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 4.1e-97 358.6 268 66.0
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 5.4e-97 358.2 266 66.5
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 5.4e-97 358.2 268 65.3
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 7.1e-97 357.8 267 67.8
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.6e-96 356.7 243 68.7
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 2.1e-96 356.3 304 61.8
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 2.7e-96 355.9 268 65.3
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 6.0e-96 354.8 229 73.8
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 7.8e-96 354.4 243 70.4
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 7.8e-96 354.4 245 68.6
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.0e-95 354.0 269 67.3
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 1.7e-95 353.2 244 69.3
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.7e-95 353.2 244 70.1
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 1.7e-95 353.2 244 68.9
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 8.6e-95 350.9 265 64.2
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 8.6e-95 350.9 244 70.5
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.1e-94 350.5 283 63.6
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 1.9e-94 349.7 250 67.6
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 2.5e-94 349.4 262 65.3
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.5e-94 349.4 245 66.5
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 2.5e-94 349.4 239 71.1
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 3.3e-94 349.0 265 64.9
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 3.3e-94 349.0 234 72.2
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 5.6e-94 348.2 267 62.9
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 5.6e-94 348.2 234 73.1
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 7.3e-94 347.8 245 69.0
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 9.5e-94 347.4 267 63.3
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.2e-93 347.1 267 62.9
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 2.8e-93 345.9 271 64.6
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 3.6e-93 345.5 252 65.5
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 6.2e-93 344.7 245 66.5
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 6.2e-93 344.7 267 62.5
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 6.2e-93 344.7 245 67.3
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 1.1e-92 344.0 235 68.9
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 1.1e-92 344.0 243 67.9
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 2.3e-92 342.8 245 65.7
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 3.1e-92 342.4 253 63.6
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 4.0e-92 342.0 265 63.8
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 6.8e-92 341.3 267 61.8
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 1.5e-91 340.1 246 65.9
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 3.4e-91 339.0 237 68.4
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 4.4e-91 338.6 265 64.2
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 5.8e-91 338.2 337 56.4
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 7.6e-91 337.8 246 67.9
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.3e-90 337.0 245 65.7
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 4.9e-90 335.1 353 52.4
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 8.4e-90 334.3 245 66.1
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 1.1e-89 334.0 227 70.0
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 1.1e-89 334.0 211 76.3
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.2e-89 332.4 252 65.5
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 2.1e-88 329.7 246 67.1
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 4.6e-88 328.6 214 73.4
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.0e-87 327.4 264 60.6
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.1e-86 323.9 211 73.9
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 1.1e-86 323.9 211 75.4
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 5.6e-86 321.6 211 73.5
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 8.1e-85 317.8 267 61.8
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.8e-84 316.6 267 59.6
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.5e-83 313.5 267 61.4
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.5e-83 313.5 245 62.9
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 1.2e-80 303.9 210 69.0
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 2.1e-80 303.1 276 59.8
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 2.1e-80 303.1 268 60.4
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 6.0e-80 301.6 244 60.7
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.3e-79 300.4 255 60.0
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 1.3e-79 300.4 243 63.4
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.3e-79 299.7 205 68.3
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 6.2e-77 291.6 184 78.8
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 1.8e-76 290.0 237 58.6
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 2.0e-75 286.6 267 53.9
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 4.4e-75 285.4 201 68.7
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 7.6e-75 284.6 267 58.8
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.1e-73 280.8 243 58.4
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.2e-73 278.9 204 67.2
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.0e-71 274.2 263 54.4
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.3e-71 273.9 305 49.2
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.9e-70 270.0 196 68.9
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.3e-69 267.3 202 64.4
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.1e-68 264.2 234 56.0
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 3.1e-68 262.7 245 53.1
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 5.3e-68 261.9 243 53.9
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 2.0e-67 260.0 201 61.7
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 3.2e-65 252.7 265 54.0
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 1.6e-64 250.4 252 49.6
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 2.6e-59 233.0 146 78.8
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 4.9e-58 228.8 234 50.0
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.7e-56 223.0 207 58.5
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 1.3e-55 220.7 139 74.1
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 1.1e-54 217.6 246 45.5
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.1e-52 211.1 187 59.4
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.2e-45 186.8 166 60.8
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 2.0e-43 180.3 122 73.0
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 3.7e-37 159.5 119 72.3
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 3.7e-37 159.5 119 72.3
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 6.9e-36 155.2 105 73.3
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 4.5e-35 152.5 104 65.4
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 2.5e-33 146.7 148 56.8
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.2e-32 144.4 100 71.0
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 2.1e-32 143.7 242 37.2
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 9.1e-28 128.3 99 65.7
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 4.2e-25 119.4 175 44.0
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 9.7e-22 108.2 82 65.9
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 4.8e-21 105.9 165 40.0
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 9.1e-20 101.7 64 68.8
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 6.1e-16 89.0 85 55.3
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 1.8e-15 87.4 289 25.3
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 2.0e-14 84.0 65 55.4
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.2e-13 80.5 68 57.4
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.8e-12 77.4 65 56.9
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 6.1e-08 62.4 123 37.4


User provided reference genes

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