Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 9.2e-75 283.5 145 100.0
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 8.4e-52 207.2 108 97.2
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 5.1e-49 198.0 105 94.3
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 5.1e-49 198.0 105 94.3
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.1e-48 196.8 105 93.3
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 2.5e-48 195.7 105 93.3
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 2.5e-48 195.7 105 93.3
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 7.3e-48 194.1 105 93.3
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.6e-47 193.0 105 91.4
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 2.8e-47 192.2 106 90.6
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 4.7e-47 191.4 117 82.1
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-46 189.9 105 89.5
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.8e-46 189.5 107 87.9
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 1.8e-46 189.5 107 87.9
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 3.1e-46 188.7 107 85.0
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 6.9e-46 187.6 107 86.0
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 6.9e-46 187.6 107 86.9
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 6.9e-46 187.6 107 86.9
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.0e-45 186.0 105 86.7
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 3.4e-45 185.3 107 85.0
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 4.4e-45 184.9 107 85.0
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 9.9e-45 183.7 108 87.0
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 9.9e-45 183.7 108 87.0
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 1.3e-44 183.3 105 87.6
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 2.2e-44 182.6 107 85.0
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 2.2e-44 182.6 107 85.0
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 2.2e-44 182.6 107 85.0
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 2.9e-44 182.2 104 86.5
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 4.9e-44 181.4 104 86.5
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 6.4e-44 181.0 104 85.6
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 6.4e-44 181.0 108 83.3
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 6.4e-44 181.0 104 85.6
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.6e-42 176.4 104 81.7
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 3.3e-40 168.7 104 78.8
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.1e-39 166.0 105 78.1
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 3.6e-39 165.2 105 74.3
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 4.8e-39 164.9 105 72.4
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 4.8e-39 164.9 104 75.0
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 4.8e-39 164.9 104 76.0
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.1e-38 163.7 104 76.9
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 1.4e-38 163.3 105 71.4
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.8e-38 162.9 105 72.4
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 4.0e-38 161.8 105 71.4
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 4.0e-38 161.8 105 71.4
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 5.3e-38 161.4 104 76.9
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 6.9e-38 161.0 104 74.0
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 6.9e-38 161.0 105 74.3
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 6.9e-38 161.0 105 74.3
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 1.5e-37 159.8 104 73.1
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.5e-37 159.8 105 73.3
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 2.0e-37 159.5 105 71.4
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 3.4e-37 158.7 104 72.1
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 3.4e-37 158.7 104 71.2
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 3.4e-37 158.7 102 73.5
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 4.5e-37 158.3 105 68.6
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 5.8e-37 157.9 104 71.2
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 7.6e-37 157.5 104 71.2
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.9e-37 157.1 103 69.9
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.9e-37 157.1 103 69.9
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.9e-37 157.1 103 69.9
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 9.9e-37 157.1 105 69.5
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 1.3e-36 156.8 103 69.9
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.3e-36 156.8 103 69.9
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 2.9e-36 155.6 103 68.9
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 3.8e-36 155.2 104 70.2
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 4.9e-36 154.8 104 69.2
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 4.9e-36 154.8 104 70.2
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.9e-36 154.8 103 68.9
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 6.4e-36 154.5 104 67.3
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 8.4e-36 154.1 105 70.5
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 8.4e-36 154.1 102 69.6
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 8.4e-36 154.1 104 70.2
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.1e-35 153.7 104 68.3
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.1e-35 153.7 104 70.2
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.4e-35 153.3 103 68.0
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 1.4e-35 153.3 105 71.4
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.9e-35 152.9 104 71.2
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.9e-35 152.9 102 68.6
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.9e-35 152.9 102 68.6
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.9e-35 152.9 104 69.2
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 3.2e-35 152.1 102 68.6
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 4.2e-35 151.8 105 68.6
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 4.2e-35 151.8 104 68.3
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 5.4e-35 151.4 103 72.8
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 5.4e-35 151.4 104 67.3
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 9.3e-35 150.6 104 67.3
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 1.2e-34 150.2 105 67.6
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 2.1e-34 149.4 105 67.6
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 2.1e-34 149.4 102 70.6
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.1e-34 149.4 103 68.9
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 2.1e-34 149.4 103 68.0
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 3.5e-34 148.7 102 68.6
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 4.6e-34 148.3 104 67.3
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 4.6e-34 148.3 106 65.1
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 4.6e-34 148.3 102 68.6
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 6.0e-34 147.9 102 70.6
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 6.0e-34 147.9 104 68.3
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 6.0e-34 147.9 102 67.6
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 7.9e-34 147.5 104 68.3
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 7.9e-34 147.5 102 69.6
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.0e-33 147.1 102 68.6
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.0e-33 147.1 105 66.7
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 1.0e-33 147.1 102 68.6
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 1.8e-33 146.4 102 68.6
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 2.3e-33 146.0 102 68.6
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 2.3e-33 146.0 102 68.6
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 3.0e-33 145.6 105 65.7
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 5.1e-33 144.8 103 65.0
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 5.1e-33 144.8 102 65.7
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 8.7e-33 144.1 104 68.3
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 8.7e-33 144.1 105 64.8
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.1e-32 143.7 105 64.8
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.1e-32 143.7 104 67.3
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.9e-32 142.9 103 66.0
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.9e-32 142.9 104 66.3
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 4.3e-32 141.7 108 63.9
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 5.6e-32 141.4 105 62.9
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 9.6e-32 140.6 103 65.0
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 9.6e-32 140.6 106 64.2
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 9.6e-32 140.6 106 64.2
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.3e-31 140.2 105 63.8
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.6e-31 139.8 105 61.9
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 3.7e-31 138.7 105 61.0
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.8e-31 138.3 102 65.7
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.8e-31 138.3 102 65.7
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.8e-31 138.3 102 65.7
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.8e-30 136.3 102 65.7
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.5e-29 131.7 105 61.0
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 9.9e-29 130.6 93 63.4
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 1.3e-28 130.2 105 57.1
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.7e-28 129.8 87 71.3
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.1e-27 127.1 94 64.9
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.4e-27 126.7 102 57.8
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.9e-27 126.3 103 60.2
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 2.4e-27 125.9 88 65.9
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 2.7e-26 122.5 87 66.7
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 7.9e-26 120.9 80 71.2
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 7.9e-26 120.9 103 60.2
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 3.0e-25 119.0 89 66.3
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 5.1e-25 118.2 87 66.7
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.1e-24 117.1 88 62.5
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.5e-24 115.9 88 62.5
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.5e-24 115.9 103 54.4
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 7.4e-24 114.4 103 52.4
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 2.1e-23 112.8 105 56.2
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 1.1e-22 110.5 86 60.5
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.0e-20 104.0 89 53.9
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.9e-20 102.4 99 56.6
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 8.4e-20 100.9 52 90.4
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 8.4e-20 100.9 52 90.4
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 5.5e-19 98.2 102 49.0
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.2e-18 97.1 106 48.1
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.6e-18 96.7 112 47.3
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.9e-18 94.4 96 54.2
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.0e-17 94.0 107 46.7
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 7.4e-16 87.8 107 43.0
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 9.7e-16 87.4 106 44.3
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 4.8e-15 85.1 93 49.5
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 1.1e-14 84.0 106 41.5
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.2e-13 80.5 74 58.1
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.4e-11 73.6 129 39.5
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.3e-08 62.0 65 50.8
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 4.3e-08 62.0 96 40.6
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 5.3e-06 55.1 124 30.6


User provided reference genes

Program Settings