Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 4.5e-70 268.1 164 100.0
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 3.0e-50 202.2 169 70.4
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.2e-48 196.1 169 75.7
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 6.3e-48 194.5 165 70.9
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 6.1e-43 177.9 169 68.0
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 9.2e-39 164.1 157 59.9
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.8e-34 149.8 152 57.9
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 4.4e-33 145.2 162 56.8
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 6.0e-30 134.8 159 55.3
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.7e-29 133.3 162 59.3
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 6.6e-29 131.3 162 59.3
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 3.6e-27 125.6 122 68.9
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 1.7e-24 116.7 112 59.8
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 6.0e-22 108.2 148 43.9
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.0e-21 107.5 81 67.9
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.0e-21 107.5 81 67.9
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 6.6e-21 104.8 83 65.1
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 6.6e-21 104.8 83 65.1
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 6.6e-21 104.8 81 64.2
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.1e-20 104.0 79 67.1
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.1e-20 104.0 81 66.7
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.5e-20 103.6 80 65.0
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.5e-20 103.6 80 65.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 1.9e-20 103.2 81 65.4
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.9e-20 103.2 81 64.2
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 7.3e-20 101.3 84 64.3
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 9.5e-20 100.9 78 67.9
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 9.5e-20 100.9 76 67.1
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.6e-19 100.1 80 63.8
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.6e-19 100.1 80 63.8
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.6e-19 100.1 81 64.2
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.1e-19 99.8 85 62.4
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 2.8e-19 99.4 77 64.9
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 4.7e-19 98.6 83 60.2
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 8.1e-19 97.8 80 66.2
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.8e-18 96.7 81 58.0
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.8e-18 96.7 80 61.2
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.4e-18 96.3 81 58.0
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 4.0e-18 95.5 81 60.5
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.2e-18 95.1 82 59.8
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 5.2e-18 95.1 81 60.5
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 5.2e-18 95.1 73 68.5
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 6.8e-18 94.7 78 65.4
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 6.8e-18 94.7 79 63.3
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.8e-18 94.7 79 63.3
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.8e-18 94.7 79 63.3
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.8e-18 94.7 79 63.3
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.8e-18 94.7 79 63.3
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 6.8e-18 94.7 79 59.5
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.9e-18 94.4 82 59.8
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 8.9e-18 94.4 81 60.5
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 1.5e-17 93.6 75 61.3
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.5e-17 93.6 79 62.0
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 2.0e-17 93.2 82 58.5
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 2.0e-17 93.2 82 58.5
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 2.0e-17 93.2 76 61.8
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 7.6e-17 91.3 75 61.3
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.7e-16 90.1 77 62.3
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 1.7e-16 90.1 68 69.1
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.2e-16 89.7 71 66.2
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 2.2e-16 89.7 83 60.2
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.2e-16 89.7 83 60.2
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.2e-16 89.7 79 58.2
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 2.9e-16 89.4 207 33.3
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 3.8e-16 89.0 77 61.0
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 4.9e-16 88.6 77 59.7
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 4.9e-16 88.6 83 56.6
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 6.4e-16 88.2 80 56.2
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 8.4e-16 87.8 76 60.5
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 8.4e-16 87.8 68 69.1
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 8.4e-16 87.8 71 64.8
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.9e-15 86.7 83 56.6
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.2e-15 85.9 66 68.2
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 4.2e-15 85.5 69 60.9
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.2e-15 85.5 206 33.5
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 9.2e-15 84.3 78 57.7
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 9.2e-15 84.3 68 63.2
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.2e-14 84.0 68 63.2
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.6e-14 83.6 68 64.7
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.3e-13 80.5 68 60.3
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.3e-13 80.5 68 60.3
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 2.3e-13 79.7 70 54.3
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 2.3e-13 79.7 66 57.6
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 3.9e-13 79.0 77 55.8
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.9e-13 79.0 59 67.8
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.5e-12 77.0 67 62.7
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.9e-12 76.6 68 52.9
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.9e-12 76.6 69 58.0
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.9e-12 76.6 74 52.7
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.5e-12 76.3 70 60.0
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.3e-12 75.9 69 50.7
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 5.6e-12 75.1 67 55.2
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.2e-11 73.9 67 53.7
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.1e-11 73.2 55 67.3
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 2.1e-11 73.2 69 55.1
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.8e-11 72.8 57 64.9
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 2.8e-11 72.8 67 53.7
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.6e-11 72.4 67 52.2
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 3.6e-11 72.4 67 52.2
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 4.7e-11 72.0 72 47.2
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 6.2e-11 71.6 70 51.4
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 6.2e-11 71.6 78 55.1
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 8.1e-11 71.2 67 50.7
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 8.1e-11 71.2 78 50.0
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 8.1e-11 71.2 83 51.8
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.1e-10 70.9 53 67.9
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.4e-10 70.5 67 50.7
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.4e-10 70.5 69 49.3
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.4e-10 70.5 67 53.7
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.8e-10 70.1 68 50.0
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 1.8e-10 70.1 62 59.7
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.4e-10 69.7 81 46.9
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.4e-10 69.7 189 31.7
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 2.4e-10 69.7 57 61.4
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.1e-10 69.3 61 59.0
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 3.1e-10 69.3 79 48.1
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 4.0e-10 68.9 78 44.9
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 4.0e-10 68.9 67 47.8
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 5.2e-10 68.6 67 47.8
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 5.2e-10 68.6 67 49.3
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 5.2e-10 68.6 67 50.7
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 6.9e-10 68.2 75 50.7
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 6.9e-10 68.2 66 48.5
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 6.9e-10 68.2 59 59.3
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 6.9e-10 68.2 65 52.3
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.0e-10 67.8 66 53.0
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 9.0e-10 67.8 67 52.2
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.2e-09 67.4 70 48.6
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.5e-09 67.0 73 49.3
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.5e-09 67.0 67 46.3
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 2.0e-09 66.6 66 51.5
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.0e-09 66.6 78 46.2
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.0e-09 66.6 73 49.3
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.0e-09 66.6 70 48.6
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 3.4e-09 65.9 82 46.3
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.4e-09 65.9 69 52.2
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.3e-08 63.9 68 47.1
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.2e-08 63.2 68 50.0
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 4.9e-08 62.0 53 62.3
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 6.4e-08 61.6 73 41.1
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 6.4e-08 61.6 82 43.9
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.1e-07 60.8 84 45.2
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.4e-07 60.5 69 49.3
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.4e-07 59.7 64 46.9
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 2.4e-07 59.7 71 45.1
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 2.4e-07 59.7 68 44.1
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 4.2e-07 58.9 65 46.2
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 9.3e-07 57.8 68 44.1
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 9.3e-07 57.8 68 44.1
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.6e-06 57.0 76 43.4
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 2.7e-06 56.2 67 43.3
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.7e-06 56.2 51 54.9
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.7e-06 56.2 53 50.9
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.5e-06 55.8 51 54.9
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 4.6e-06 55.5 78 39.7
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 7.8e-06 54.7 71 38.0


User provided reference genes

Program Settings