Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 4.9e-260 900.6 445 100.0
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 2.5e-248 861.7 445 94.8
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 8.9e-246 853.2 443 94.4
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 4.4e-245 850.9 445 93.5
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.3e-236 822.8 446 91.0
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 8.4e-236 820.1 466 86.7
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 4.9e-228 794.3 459 85.6
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 6.4e-228 793.9 445 88.5
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 5.4e-227 790.8 442 88.5
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 3.5e-226 788.1 446 85.0
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 9.0e-214 746.9 451 85.4
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 2.1e-207 725.7 411 87.3
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 2.0e-205 719.2 445 76.0
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.4e-204 713.8 444 76.6
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.3e-201 706.4 445 74.2
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 3.9e-201 704.9 445 74.8
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 6.7e-201 704.1 445 76.2
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 8.7e-201 703.7 445 75.5
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 1.9e-200 702.6 445 74.6
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 1.9e-200 702.6 445 74.6
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 2.5e-200 702.2 445 75.1
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 5.7e-200 701.0 445 74.8
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 5.7e-200 701.0 444 75.2
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 7.4e-200 700.7 445 73.3
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 2.2e-199 699.1 446 73.5
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 2.8e-199 698.7 445 74.2
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 1.4e-198 696.4 445 73.5
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 4.1e-198 694.9 446 74.4
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 4.5e-197 691.4 445 74.6
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 7.7e-197 690.6 443 73.8
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 1.0e-196 690.3 443 73.4
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 1.3e-196 689.9 439 75.2
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 2.2e-196 689.1 445 74.4
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 6.5e-196 687.6 441 73.9
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 8.5e-196 687.2 474 70.3
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 3.2e-195 685.3 441 73.0
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 5.5e-195 684.5 445 73.5
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 5.5e-195 684.5 457 73.7
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 2.1e-194 682.6 445 73.3
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 4.6e-194 681.4 445 74.8
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 1.0e-193 680.2 441 73.7
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 1.4e-193 679.9 445 72.4
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.8e-193 679.5 437 74.1
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 2.3e-193 679.1 443 72.2
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 3.0e-193 678.7 442 72.2
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 5.1e-193 677.9 445 72.8
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 1.5e-192 676.4 443 72.7
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 1.5e-189 666.4 445 72.8
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 5.9e-189 664.5 440 70.9
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 2.9e-188 662.1 445 72.1
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 2.9e-188 662.1 435 72.9
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 6.5e-188 661.0 441 72.3
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 2.5e-187 659.1 449 70.4
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 4.2e-187 658.3 445 72.4
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 2.1e-186 656.0 445 71.7
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 3.0e-185 652.1 447 69.4
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 3.9e-185 651.7 439 69.0
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 1.7e-183 646.4 446 71.3
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 2.8e-183 645.6 441 70.3
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 6.3e-183 644.4 442 70.4
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 7.0e-182 641.0 431 72.2
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.0e-181 639.4 448 68.1
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 2.2e-180 636.0 443 68.8
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 3.8e-180 635.2 445 67.4
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 6.5e-180 634.4 447 69.6
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.1e-179 633.6 465 69.2
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 5.5e-179 631.3 422 72.3
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 2.1e-178 629.4 438 69.6
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.0e-177 627.1 431 71.0
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.1e-176 623.6 405 71.6
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.4e-169 600.1 416 70.0
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 4.4e-168 595.1 434 73.0
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 9.7e-168 594.0 445 65.8
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 2.4e-166 589.3 435 65.1
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 3.8e-164 582.0 421 68.9
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 3.2e-163 578.9 360 74.2
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.2e-163 578.6 341 78.9
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.2e-162 577.0 468 63.0
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 4.0e-161 572.0 447 64.2
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 4.8e-159 565.1 383 70.0
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.0e-156 557.4 366 72.4
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.0e-156 557.4 366 72.7
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 3.7e-151 538.9 656 47.0
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 8.3e-151 537.7 353 74.2
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 2.1e-146 523.1 438 58.0
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 4.4e-144 515.4 443 57.8
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.7e-143 513.5 354 69.8
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 4.9e-143 511.9 444 60.1
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 5.4e-134 481.9 444 55.6
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 1.7e-132 476.9 389 61.2
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.9e-131 473.4 436 56.7
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 7.3e-131 471.5 445 54.6
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 1.6e-130 470.3 521 51.1
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 5.2e-129 465.3 440 54.8
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 7.5e-128 461.5 343 68.5
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.6e-125 453.8 363 60.1
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 1.1e-121 441.0 382 61.0
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 3.1e-121 439.5 285 73.3
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 1.4e-118 430.6 285 72.6
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 1.6e-117 427.2 285 71.9
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 1.7e-116 423.7 280 73.2
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 3.0e-116 422.9 279 74.6
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 6.2e-114 415.2 445 51.7
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.4e-113 414.1 450 51.8
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 9.9e-112 407.9 459 46.0
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 6.0e-109 398.7 441 51.7
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 5.6e-107 392.1 286 66.8
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 1.6e-106 390.6 445 50.3
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 8.4e-103 378.3 407 51.4
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.3e-100 370.9 287 63.1
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 5.3e-97 359.0 445 46.7
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 7.9e-93 345.1 212 78.8
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 8.7e-92 341.7 212 78.3
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 2.6e-88 330.1 422 46.0
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 2.5e-86 323.6 339 48.7
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.4e-68 264.6 152 82.2
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.4e-65 253.8 163 74.8
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.4e-65 253.8 163 74.8
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.5e-64 249.6 163 73.6
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 7.2e-62 242.3 152 72.4
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 4.4e-59 233.0 186 61.3
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 1.8e-49 201.1 126 71.4
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.8e-47 193.4 130 67.7
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 7.2e-46 189.1 126 67.5
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 7.2e-46 189.1 130 66.2
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 4.4e-43 179.9 271 35.8
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 5.7e-43 179.5 131 66.4
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 2.8e-42 177.2 100 91.0
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.1e-41 175.3 123 63.4
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.1e-41 175.3 95 86.3
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.1e-38 165.2 177 53.1
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 2.4e-33 147.5 96 70.8
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.1e-28 130.6 93 67.7
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 1.1e-25 122.1 105 58.1
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 8.6e-23 112.5 107 50.5
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.9e-17 94.7 45 95.6
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 3.9e-15 87.0 66 65.2
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.1e-14 85.5 69 58.0
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.5e-14 84.3 63 66.7
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 1.2e-13 82.0 63 65.1
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 6.2e-13 79.7 48 68.8
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 9.9e-11 72.4 31 93.5


User provided reference genes

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