Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 0.0e+00 2326.2 1183 100.0
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 0.0e+00 2187.5 1166 94.6
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 0.0e+00 2052.7 1170 89.4
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 0.0e+00 1948.7 1178 86.3
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 0.0e+00 1850.1 1180 82.2
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 0.0e+00 1850.1 1180 82.2
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 0.0e+00 1807.0 1172 81.2
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 0.0e+00 1790.0 1176 80.4
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 0.0e+00 1760.0 1176 79.8
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 0.0e+00 1518.8 1140 71.9
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 0.0e+00 1501.1 1164 70.2
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1147.5 1184 53.6
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1125.2 1187 53.7
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1124.4 1198 51.9
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1124.4 1185 53.2
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1121.3 1200 51.9
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1113.6 1186 53.0
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 1112.8 1195 51.5
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1112.4 1187 52.7
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1110.9 1200 51.5
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1102.8 1198 51.8
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1097.4 1188 52.9
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 0.0e+00 1095.1 1182 52.0
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1089.7 1187 52.1
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1089.7 1183 51.2
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 0.0e+00 1079.3 1139 54.2
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 0.0e+00 1075.5 1197 51.0
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 1.6e-311 1073.2 1154 51.9
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 1.6e-311 1073.2 1208 50.8
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.1e-310 1069.3 1187 51.5
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 3.0e-309 1065.4 1187 51.4
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 2.9e-304 1048.9 1205 51.5
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 1.6e-302 1043.1 1141 51.3
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 4.7e-294 1015.0 1211 49.8
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 2.4e-290 1002.7 1197 47.9
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 7.0e-290 1001.1 1185 50.5
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 5.0e-288 995.0 1221 48.2
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 4.7e-286 988.4 1201 47.7
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 6.2e-286 988.0 1208 46.7
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 6.4e-283 978.0 1177 48.6
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 7.8e-281 971.1 1179 47.6
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 6.6e-280 968.0 1205 48.0
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 6.6e-280 968.0 1218 47.5
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 1.9e-279 966.5 1177 48.2
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 2.1e-278 963.0 1207 46.4
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 1.5e-276 956.8 1193 46.9
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 1.3e-275 953.7 1187 46.3
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 2.2e-275 953.0 1180 48.2
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 2.4e-274 949.5 1196 47.2
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 1.3e-272 943.7 1328 43.4
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.2e-268 930.6 1188 46.7
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 2.6e-268 929.5 1085 49.8
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 1.4e-261 907.1 1174 44.7
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 6.9e-261 904.8 1188 46.2
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 7.6e-260 901.4 858 57.6
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 6.0e-257 891.7 1334 42.2
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 3.3e-255 885.9 1203 44.1
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 3.3e-255 885.9 1158 45.7
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 4.3e-255 885.6 1029 49.2
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 6.2e-254 881.7 1123 47.1
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 1.1e-253 880.9 1070 48.7
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 1.4e-253 880.6 1070 48.6
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 9.9e-252 874.4 1220 44.0
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 1.7e-251 873.6 1187 45.8
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 7.1e-250 868.2 1071 47.9
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 9.3e-250 867.8 1205 43.7
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 8.4e-243 844.7 1343 40.1
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 1.2e-241 840.9 1210 41.9
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 7.9e-241 838.2 1079 46.0
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 5.7e-231 805.4 486 85.2
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 1.5e-228 797.3 1205 41.9
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 2.0e-228 797.0 1077 45.0
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 5.0e-227 792.3 1072 46.1
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 5.7e-223 778.9 1134 43.6
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 6.1e-217 758.8 833 50.9
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.8e-216 757.3 1177 40.3
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.4e-205 721.1 895 48.3
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 7.2e-202 708.8 999 44.7
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 2.0e-196 690.6 1194 39.0
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 4.5e-188 662.9 835 45.9
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 2.2e-182 644.0 872 44.2
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 3.6e-169 600.1 660 50.9
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 1.5e-167 594.7 951 38.7
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 2.1e-164 584.3 934 39.4
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 3.7e-158 563.5 601 52.7
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 4.9e-158 563.1 490 59.8
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 1.1e-157 562.0 1137 33.3
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 8.1e-153 545.8 1122 35.0
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 3.4e-143 513.8 593 49.4
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 4.6e-140 503.4 563 51.0
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.0e-139 502.3 670 43.4
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 7.1e-133 479.6 763 39.2
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 3.9e-131 473.8 551 49.7
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 3.8e-126 457.2 255 88.2
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 4.1e-120 437.2 563 45.5
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 2.2e-118 431.4 596 43.6
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 7.9e-108 396.4 539 45.8
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 3.9e-107 394.0 1157 29.5
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 7.2e-85 320.1 744 30.9
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 1.6e-84 318.9 506 40.7
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.2e-77 294.3 358 47.2
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 6.8e-75 287.0 258 58.9
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 3.6e-68 264.6 427 41.0
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 5.4e-64 250.8 801 28.1
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.3e-53 214.5 174 64.4
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.3e-53 214.5 123 88.6
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.1e-52 212.2 255 46.7
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 7.5e-50 203.8 404 35.1
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 2.1e-47 195.7 571 31.3
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 3.4e-42 178.3 170 57.6
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 7.6e-42 177.2 176 59.7
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.0e-38 166.8 230 46.5
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 3.0e-38 165.2 170 53.5
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 5.1e-38 164.5 255 40.8
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.5e-37 162.2 240 43.3
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 3.6e-36 158.3 1148 21.0
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 6.9e-35 154.1 356 30.6
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 4.3e-29 134.8 245 36.7
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 4.8e-28 131.3 114 63.2
CARHR293860 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.4e-27 129.0 77 85.7
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.2e-25 122.5 83 72.3
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 9.3e-24 117.1 63 85.7
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.2e-23 116.7 170 42.9
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 5.6e-21 107.8 61 88.5
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.1e-20 105.9 73 71.2
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 4.5e-18 98.2 71 70.4
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 7.6e-18 97.4 95 53.7
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.9e-17 95.5 134 41.8
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.9e-16 92.8 96 45.8
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 1.9e-16 92.8 148 39.2
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 4.2e-16 91.7 97 48.5
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 7.1e-16 90.9 97 48.5
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.3e-14 86.7 257 26.5
CARHR046170 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.3e-12 80.1 46 87.0
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.1e-11 77.0 95 46.3
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 9.0e-11 73.9 88 43.2
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.2e-10 73.6 88 43.2
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 1.2e-10 73.6 71 57.7
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 5.8e-10 71.2 123 39.0
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.0e-09 70.5 65 61.5
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.9e-09 68.9 58 53.4
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 4.9e-09 68.2 97 43.3
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.2e-08 65.5 77 46.8


User provided reference genes

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