Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.8e-199 699.1 364 100.0
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 4.8e-189 664.5 362 94.2
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 2.6e-187 658.7 389 89.2
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 3.8e-186 654.8 362 93.1
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 3.8e-186 654.8 362 93.4
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 5.0e-186 654.4 362 93.1
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 5.0e-186 654.4 362 93.1
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 5.0e-186 654.4 362 93.1
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 1.4e-185 652.9 362 93.1
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 1.9e-185 652.5 362 92.5
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 3.2e-185 651.7 362 92.3
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 4.2e-177 624.8 363 89.3
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 8.8e-175 617.1 362 88.1
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.8e-172 609.4 361 85.6
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.8e-156 556.2 339 81.4
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 7.7e-155 550.8 340 80.0
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 1.6e-152 543.1 348 78.4
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 2.8e-152 542.3 339 78.8
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 6.1e-152 541.2 339 78.5
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 8.0e-152 540.8 339 79.1
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 1.0e-151 540.4 347 78.1
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 1.0e-151 540.4 339 79.6
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 4.0e-151 538.5 350 76.3
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 6.8e-151 537.7 339 78.8
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 6.8e-151 537.7 339 78.8
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 8.9e-151 537.3 337 78.3
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.0e-150 536.2 338 77.8
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 2.0e-150 536.2 339 76.7
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 2.6e-150 535.8 339 78.2
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 4.4e-150 535.0 337 79.2
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 9.8e-150 533.9 338 77.5
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.3e-149 533.5 350 76.3
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.3e-149 533.5 339 78.2
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 1.7e-149 533.1 339 78.2
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.2e-149 532.7 346 76.3
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 2.8e-149 532.3 339 77.0
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 6.3e-149 531.2 339 77.3
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 8.3e-149 530.8 346 76.0
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 8.3e-149 530.8 338 77.2
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 3.1e-148 528.9 354 74.0
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 5.4e-148 528.1 350 75.7
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 7.0e-148 527.7 361 74.2
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 1.6e-147 526.6 339 75.5
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 1.6e-147 526.6 341 77.1
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 1.6e-147 526.6 339 77.3
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 2.0e-147 526.2 354 74.0
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 4.5e-147 525.0 339 75.2
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.0e-146 523.9 339 76.7
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.7e-146 523.1 339 76.1
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 5.0e-146 521.5 339 76.4
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 6.6e-146 521.2 340 75.6
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 8.6e-146 520.8 337 76.0
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 1.1e-145 520.4 355 74.6
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.9e-145 519.6 348 74.7
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 2.5e-145 519.2 347 73.5
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 5.6e-145 518.1 346 76.3
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 7.3e-145 517.7 349 74.2
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 2.1e-144 516.2 339 74.9
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 4.7e-144 515.0 339 76.1
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 4.7e-144 515.0 339 75.8
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 1.0e-143 513.8 339 74.6
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.8e-143 513.1 345 73.6
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 4.0e-143 511.9 337 75.7
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 6.8e-143 511.1 338 76.3
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 2.6e-142 509.2 346 72.0
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 3.4e-142 508.8 337 75.7
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.9e-141 505.8 339 73.5
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 4.9e-141 505.0 346 74.3
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 4.9e-141 505.0 341 73.0
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 1.4e-140 503.4 337 75.4
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 2.4e-140 502.7 339 74.3
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 3.2e-140 502.3 339 72.0
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 7.0e-140 501.1 339 73.2
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 9.2e-140 500.7 373 68.1
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.2e-139 500.4 339 73.5
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.2e-139 500.4 338 74.0
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 1.6e-139 500.0 340 72.6
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.7e-139 499.2 339 72.6
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 6.0e-139 498.0 340 72.6
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 3.3e-137 492.3 360 68.1
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 4.3e-137 491.9 337 73.0
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 1.1e-135 487.3 255 95.3
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.3e-135 486.1 291 80.1
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 1.1e-132 477.2 255 92.2
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.9e-132 476.5 309 79.6
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 1.9e-132 476.5 339 70.5
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 3.2e-132 475.7 339 70.5
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 9.2e-132 474.2 377 65.3
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 3.5e-131 472.2 339 71.1
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 6.6e-130 468.0 346 67.9
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 8.6e-130 467.6 294 79.9
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 4.3e-129 465.3 310 73.9
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.6e-128 463.4 322 73.9
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.6e-128 463.4 299 78.6
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 2.8e-128 462.6 294 79.3
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 4.7e-128 461.8 342 69.9
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 1.1e-127 460.7 300 74.3
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.2e-126 457.2 299 77.3
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 1.5e-126 456.8 294 77.9
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 5.8e-126 454.9 366 66.1
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 2.2e-125 453.0 325 70.2
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.9e-124 449.9 395 60.8
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 5.4e-124 448.4 348 65.2
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 7.8e-123 444.5 292 72.3
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 5.1e-122 441.8 356 65.4
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 8.6e-122 441.0 280 75.4
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 1.5e-121 440.3 322 71.4
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 4.7e-120 435.3 350 66.0
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 4.7e-120 435.3 310 70.3
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 3.1e-119 432.6 293 72.7
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 5.4e-116 421.8 292 71.9
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 3.6e-112 409.1 296 69.6
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 2.4e-108 396.4 301 66.8
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.2e-107 394.0 339 60.8
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 3.3e-105 386.0 257 76.7
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 2.8e-104 382.9 386 57.0
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 2.2e-101 373.2 245 78.0
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 6.4e-101 371.7 342 55.3
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 8.4e-101 371.3 236 76.3
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 1.1e-100 370.9 258 73.6
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 5.4e-100 368.6 342 54.4
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 6.0e-99 365.2 247 76.1
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 7.9e-99 364.8 252 73.0
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 6.7e-98 361.7 191 93.7
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 4.0e-95 352.4 349 53.6
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 5.8e-94 348.6 339 54.9
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 5.5e-92 342.0 301 61.1
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 1.2e-91 340.9 228 75.9
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.5e-89 333.2 222 75.7
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.3e-85 320.9 266 57.9
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.6e-80 303.9 171 94.2
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.4e-79 300.8 252 62.7
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 6.9e-79 298.5 317 47.9
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 6.9e-79 298.5 227 68.3
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 2.2e-77 293.5 195 74.4
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 6.5e-61 238.8 191 66.0
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.2e-51 208.0 352 39.8
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 5.4e-47 192.6 171 61.4
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 4.2e-36 156.4 99 77.8
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 5.4e-31 139.4 74 86.5
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 5.4e-31 139.4 74 86.5
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 5.4e-31 139.4 74 86.5
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 9.2e-31 138.7 74 87.8
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 1.6e-30 137.9 75 86.7
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 1.7e-29 134.4 95 75.8
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 1.2e-25 121.7 63 88.9
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 1.2e-25 121.7 136 52.9
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 8.4e-08 62.4 46 60.9
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 1.9e-07 61.2 40 75.0


User provided reference genes

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