Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.2e-40 168.7 95 100.0
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.9e-20 102.4 58 100.0
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 4.2e-20 101.3 71 78.9
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 1.2e-19 99.8 69 82.6
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 1.2e-19 99.8 69 82.6
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 1.0e-18 96.7 58 94.8
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.4e-18 96.3 63 87.3
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 9.8e-17 90.1 94 61.7
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 9.8e-17 90.1 56 91.1
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 1.3e-16 89.7 55 92.7
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 1.7e-16 89.4 96 55.2
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.7e-16 89.4 89 64.0
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 6.3e-16 87.4 94 61.7
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.4e-15 86.3 96 56.2
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 1.8e-15 85.9 57 87.7
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 4.1e-15 84.7 91 56.0
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 4.1e-15 84.7 91 60.4
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.2e-14 83.2 87 54.0
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.6e-14 82.8 94 52.1
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 1.6e-14 82.8 94 50.0
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.5e-14 81.3 93 54.8
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 1.0e-13 80.1 98 51.0
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.3e-13 79.7 96 50.0
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.3e-13 79.0 92 53.3
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.9e-13 78.6 95 53.7
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 3.8e-13 78.2 93 53.8
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 6.5e-13 77.4 57 80.7
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 6.5e-13 77.4 98 52.0
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 8.6e-13 77.0 92 52.2
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.9e-12 75.9 64 67.2
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.9e-12 75.9 76 53.9
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 1.9e-12 75.9 94 51.1
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 2.5e-12 75.5 95 48.4
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 2.5e-12 75.5 94 53.2
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 2.5e-12 75.5 94 51.1
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 4.2e-12 74.7 89 53.9
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 5.5e-12 74.3 76 52.6
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 7.2e-12 73.9 78 55.1
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 7.2e-12 73.9 91 53.8
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 9.5e-12 73.6 78 60.3
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 1.2e-11 73.2 90 48.9
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 2.8e-11 72.0 115 43.5
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 4.7e-11 71.2 57 73.7
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 8.0e-11 70.5 84 53.6
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 1.0e-10 70.1 95 48.4
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 4.0e-10 68.2 85 51.8
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 8.8e-10 67.0 65 56.9
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.5e-09 66.2 72 51.4
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 3.4e-09 65.1 54 64.8
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 1.3e-08 63.2 69 53.6
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.7e-08 62.8 72 47.2
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.7e-08 62.8 73 45.2
BolC1t04796H Brassica oleracea HOM05D004642 ORTHO05D005466 2.2e-08 62.4 35 91.4
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.8e-08 62.0 59 55.9
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 4.9e-08 61.2 34 97.1
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 4.9e-08 61.2 92 44.6
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.1e-07 60.1 96 44.8
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.8e-07 59.3 71 54.9
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 3.1e-07 58.5 39 82.1
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 4.1e-07 58.2 32 96.9
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 4.1e-07 58.2 32 93.8
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 4.1e-07 58.2 32 96.9
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 7.0e-07 57.4 91 41.8
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 1.2e-06 56.6 31 96.8
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 1.2e-06 56.6 87 46.0
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 2.0e-06 55.8 96 38.5
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 3.5e-06 55.1 31 93.5
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 5.9e-06 54.3 36 88.9
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 5.9e-06 54.3 65 49.2


User provided reference genes

Program Settings