Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 2.1e-58 228.8 113 100.0
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 3.7e-55 218.0 113 95.6
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 5.5e-51 204.1 113 89.4
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 1.0e-44 183.3 114 82.5
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 1.1e-43 179.9 113 81.4
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 5.5e-43 177.6 113 80.5
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 3.0e-41 171.8 113 77.9
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 1.3e-39 166.4 113 74.3
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 2.2e-39 165.6 112 76.8
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 2.2e-39 165.6 112 76.8
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 2.2e-39 165.6 113 76.1
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 5.9e-37 157.5 109 74.3
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 2.4e-22 109.0 107 57.9
BolC3t16642H Brassica oleracea HOM05D007866 ORTHO05D003871 4.6e-21 104.8 110 55.5
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 1.3e-15 86.7 114 51.8
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.2e-13 80.1 113 44.2
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 2.7e-13 79.0 118 40.7
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 3.5e-13 78.6 134 35.8
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 6.0e-13 77.8 134 35.8
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 7.8e-13 77.4 114 43.9
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 3.0e-12 75.5 91 47.3
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 3.9e-12 75.1 148 35.1
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 3.9e-12 75.1 148 35.1
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 8.6e-12 73.9 90 47.8
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 1.5e-11 73.2 89 47.2
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 1.5e-11 73.2 122 41.0
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.5e-11 73.2 122 41.0
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 1.5e-11 73.2 98 46.9
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 1.5e-11 73.2 55 61.8
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.9e-11 72.8 129 35.7
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 9.5e-11 70.5 151 34.4
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 9.5e-11 70.5 39 76.9
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 9.5e-11 70.5 40 85.0
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 1.2e-10 70.1 142 33.1
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.6e-10 69.7 151 35.1
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 2.8e-10 68.9 91 37.4
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 2.8e-10 68.9 151 35.1
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 3.6e-10 68.6 121 39.7
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 3.6e-10 68.6 105 35.2
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 4.7e-10 68.2 141 34.8
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 6.2e-10 67.8 46 69.6
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 6.2e-10 67.8 109 34.9
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 1.1e-09 67.0 73 46.6
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 1.4e-09 66.6 47 63.8
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 1.8e-09 66.2 38 76.3
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 1.8e-09 66.2 41 63.4
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 1.8e-09 66.2 41 78.0
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 1.8e-09 66.2 58 55.2
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.3e-09 65.9 85 42.4
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 2.3e-09 65.9 91 41.8
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 3.1e-09 65.5 93 40.9
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 4.0e-09 65.1 59 57.6
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 4.0e-09 65.1 80 45.0
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 4.0e-09 65.1 83 47.0
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 5.2e-09 64.7 93 43.0
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 5.2e-09 64.7 74 51.4
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 5.2e-09 64.7 77 50.6
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 8.9e-09 63.9 92 41.3
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 1.2e-08 63.5 103 41.7
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 1.5e-08 63.2 38 71.1
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 1.5e-08 63.2 81 45.7
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 2.0e-08 62.8 87 43.7
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 2.6e-08 62.4 79 44.3
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 2.6e-08 62.4 82 48.8
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 2.6e-08 62.4 41 73.2
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 4.4e-08 61.6 55 56.4
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 4.4e-08 61.6 82 43.9
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 4.4e-08 61.6 77 45.5
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 5.8e-08 61.2 40 75.0
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 5.8e-08 61.2 48 58.3
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 5.8e-08 61.2 107 40.2
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 7.5e-08 60.8 79 46.8
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 9.9e-08 60.5 77 50.6
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 9.9e-08 60.5 111 39.6
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 1.3e-07 60.1 36 75.0
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 1.3e-07 60.1 82 42.7
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 1.3e-07 60.1 72 45.8
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 1.7e-07 59.7 61 49.2
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 1.7e-07 59.7 81 45.7
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 1.7e-07 59.7 79 44.3
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.7e-07 59.7 86 45.3
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 2.2e-07 59.3 60 55.0
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 2.2e-07 59.3 54 59.3
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 2.2e-07 59.3 80 43.8
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 2.2e-07 59.3 80 45.0
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 2.9e-07 58.9 76 42.1
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 2.9e-07 58.9 70 47.1
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.9e-07 58.9 72 48.6
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 3.7e-07 58.5 43 65.1
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 3.7e-07 58.5 74 43.2
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 3.7e-07 58.5 81 45.7
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 4.9e-07 58.2 100 40.0
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 4.9e-07 58.2 70 47.1
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 6.4e-07 57.8 71 46.5
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 6.4e-07 57.8 73 49.3
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 8.3e-07 57.4 81 43.2
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-06 57.0 110 37.3
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-06 57.0 110 37.3
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 1.1e-06 57.0 81 44.4
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.1e-06 57.0 54 59.3
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 1.1e-06 57.0 76 48.7
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 1.4e-06 56.6 101 37.6
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 1.9e-06 56.2 105 37.1
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 1.9e-06 56.2 33 72.7
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 1.9e-06 56.2 108 36.1
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.9e-06 56.2 54 57.4
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.4e-06 55.8 69 50.7
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.4e-06 55.8 69 50.7
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 3.2e-06 55.5 112 36.6
DCAR_012139 Daucus carota HOM05D007866 ORTHO05D003871 3.2e-06 55.5 47 57.4
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 3.2e-06 55.5 92 39.1
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 4.1e-06 55.1 57 50.9
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 4.1e-06 55.1 48 60.4
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 4.1e-06 55.1 41 61.0
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 5.4e-06 54.7 75 40.0
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 5.4e-06 54.7 38 68.4
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 7.1e-06 54.3 62 50.0
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 7.1e-06 54.3 97 37.1
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 7.1e-06 54.3 54 57.4
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 7.1e-06 54.3 77 48.1
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 7.1e-06 54.3 71 47.9
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 7.1e-06 54.3 87 41.4
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 9.2e-06 53.9 50 58.0
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 9.2e-06 53.9 99 38.4
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 9.2e-06 53.9 39 69.2
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 9.2e-06 53.9 71 39.4


User provided reference genes

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