Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.3e-274 948.3 501 100.0
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.4e-239 832.8 453 97.8
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 7.5e-233 810.4 451 95.3
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 3.6e-227 791.6 493 85.6
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 3.6e-227 791.6 493 85.6
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 2.6e-225 785.4 496 87.3
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 3.4e-225 785.0 497 87.1
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 5.7e-225 784.3 498 86.3
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 7.5e-225 783.9 455 91.2
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 4.8e-224 781.2 494 82.6
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.2e-222 776.5 494 86.6
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.7e-221 772.7 494 86.0
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 5.0e-221 771.2 494 85.0
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 4.2e-220 768.1 494 85.8
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 4.2e-220 768.1 494 85.8
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 4.2e-220 768.1 494 85.8
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 5.5e-220 767.7 495 85.9
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 2.8e-216 755.4 493 82.2
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.1e-215 753.4 493 81.5
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.9e-213 745.3 460 85.0
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 4.7e-211 738.0 503 79.5
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 5.2e-210 734.6 445 88.3
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 9.2e-191 670.6 462 77.5
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.4e-186 656.8 497 71.6
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 1.3e-184 650.2 497 71.0
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 1.3e-184 650.2 492 70.7
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.7e-184 649.8 498 72.1
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 2.9e-184 649.0 497 71.4
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 3.8e-184 648.7 491 71.5
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 4.9e-184 648.3 492 72.6
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 6.4e-184 647.9 492 72.6
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.9e-183 646.4 499 70.7
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 3.2e-183 645.6 498 71.1
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 5.4e-183 644.8 441 76.0
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 7.1e-183 644.4 441 77.8
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 7.1e-183 644.4 446 76.0
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.2e-182 643.7 498 70.5
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 1.2e-182 643.7 443 77.9
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.2e-182 643.7 492 70.7
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.6e-182 643.3 498 70.5
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 2.7e-182 642.5 493 71.8
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.6e-182 641.7 499 70.3
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 6.0e-182 641.3 492 69.7
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.3e-181 640.2 447 75.8
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 3.0e-181 639.0 446 76.5
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 5.1e-181 638.3 495 71.1
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 5.1e-181 638.3 492 70.7
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 6.6e-181 637.9 441 77.3
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 8.7e-181 637.5 444 77.3
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 2.5e-180 636.0 447 76.1
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.1e-178 630.6 443 76.1
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 4.0e-178 628.6 444 76.6
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 5.3e-178 628.2 446 75.1
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.5e-177 626.7 492 67.7
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.0e-177 626.3 444 75.9
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 2.6e-177 625.9 442 75.6
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.6e-177 625.9 445 76.0
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.8e-177 624.8 499 67.9
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 2.2e-176 622.9 493 69.8
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.2e-176 622.9 495 69.3
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 8.4e-176 620.9 446 74.7
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.1e-175 620.5 497 69.0
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.9e-175 619.8 497 69.0
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 4.2e-175 618.6 496 68.1
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 5.4e-175 618.2 493 70.2
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.2e-174 617.1 441 73.2
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.1e-174 616.3 444 70.0
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.7e-174 615.9 444 70.0
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 6.0e-174 614.8 446 74.7
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 7.8e-174 614.4 441 74.8
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.0e-173 614.0 441 75.5
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.0e-173 614.0 441 75.5
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 1.0e-173 614.0 496 69.0
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.7e-173 613.2 441 74.4
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 7.3e-172 607.8 441 72.8
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 7.3e-172 607.8 441 72.1
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 7.3e-172 607.8 441 73.5
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 9.6e-172 607.4 495 67.1
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 9.6e-172 607.4 444 74.3
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.6e-171 606.7 446 74.0
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 2.1e-171 606.3 446 74.4
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 4.8e-171 605.1 441 73.7
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 4.8e-171 605.1 451 72.7
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 6.9e-170 601.3 441 72.1
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 9.0e-170 600.9 441 72.6
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.9e-168 595.9 500 66.8
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 3.8e-168 595.5 441 73.5
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.4e-167 592.8 495 66.1
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 2.4e-167 592.8 447 71.6
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 5.4e-167 591.7 505 66.5
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 9.3e-167 590.9 441 70.7
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 2.7e-166 589.3 451 71.2
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.3e-165 587.0 454 68.9
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 3.0e-165 585.9 441 70.3
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 5.1e-165 585.1 499 66.9
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.5e-164 583.6 461 68.5
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 4.3e-164 582.0 441 72.6
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 9.9e-161 570.9 443 69.5
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.3e-160 570.5 441 69.4
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.4e-159 567.0 444 69.8
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 5.5e-159 565.1 441 69.2
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.2e-158 563.9 446 68.4
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 6.0e-158 561.6 450 68.0
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 5.1e-157 558.5 446 67.7
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 8.7e-157 557.8 525 61.3
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.5e-156 556.2 445 70.3
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.2e-155 551.6 426 71.4
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 3.1e-154 549.3 447 68.0
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 5.3e-154 548.5 466 67.2
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 9.0e-154 547.7 442 64.5
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.2e-153 547.4 466 65.0
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.0e-153 546.6 466 64.8
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 3.8e-152 542.3 480 64.8
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 5.5e-151 538.5 492 59.3
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.0e-145 520.0 460 64.3
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.5e-145 518.8 507 59.0
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.2e-144 516.5 368 74.5
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.2e-144 516.5 447 63.5
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 7.4e-140 501.5 441 64.2
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 2.3e-133 479.9 441 63.5
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 4.8e-131 472.2 493 57.4
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.1e-122 444.5 396 64.1
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.4e-122 444.1 450 55.8
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.0e-112 409.1 353 65.4
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.1e-111 407.9 445 51.7
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 7.2e-103 378.6 443 51.2
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 3.3e-95 353.2 399 48.9
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.1e-90 338.2 479 41.3
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.1e-87 328.2 209 77.0
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 4.9e-83 312.8 322 51.9
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.9e-71 274.2 340 52.6
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.6e-60 237.3 211 61.6
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 2.6e-52 210.7 490 34.1
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 3.2e-50 203.8 147 68.7
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.3e-48 197.6 151 70.2
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 3.9e-48 196.8 449 32.3
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.8e-46 190.7 141 66.7
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.3e-40 171.8 187 58.8
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.5e-31 141.0 201 43.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 4.3e-31 140.2 98 66.3
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 2.2e-22 111.3 465 26.7
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.2e-20 105.5 72 69.4
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 4.4e-07 60.5 90 63.3


User provided reference genes

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