Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G44090 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 2.0e-134 482.6 276 100.0
AL700U10010 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 2.0e-134 482.6 276 100.0
AT1G30190 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 1.9e-100 369.8 282 74.8
Carub.0001s2842 Capsella rubella HOM05D007074 ORTHO05D008542 4.9e-93 345.1 287 71.1
CARHR029240 Cardamine hirsuta HOM05D007074 ORTHO05D008542 3.2e-84 315.8 283 64.7
Thhalv10008361m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 8.1e-80 301.2 297 61.3
BcaB07g32617 Brassica carinata HOM05D007074 ORTHO05D008542 1.1e-79 300.8 288 62.5
Sp1g26010 Schrenkiella parvula HOM05D007074 ORTHO05D008542 1.5e-78 297.0 283 65.4
BcaC05g27044 Brassica carinata HOM05D007074 ORTHO05D008542 1.8e-71 273.5 289 61.2
C05p29030 Brassica napus HOM05D007074 ORTHO05D008542 1.8e-71 273.5 289 61.2
BolC5t31631H Brassica oleracea HOM05D007074 ORTHO05D008542 1.8e-71 273.5 289 61.2
BcaB03g13841 Brassica carinata HOM05D007074 ORTHO05D008542 2.4e-71 273.1 278 59.7
A07p10060 Brassica napus HOM05D007074 ORTHO05D008542 4.0e-71 272.3 283 59.7
BraA07t28799Z Brassica rapa HOM05D007074 ORTHO05D008542 4.0e-71 272.3 283 59.7
A09p36350 Brassica napus HOM05D007074 ORTHO05D008542 2.6e-70 269.6 289 60.2
BraA09t39159Z Brassica rapa HOM05D007074 ORTHO05D008542 2.6e-70 269.6 289 60.2
THA.LOC104814307 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 7.1e-52 208.4 288 47.6
A04p26510 Brassica napus HOM05D007074 ORTHO05D008542 6.7e-50 201.8 283 46.3
C04p63930 Brassica napus HOM05D007074 ORTHO05D008542 6.7e-50 201.8 283 46.3
Thhalv10017803m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 1.1e-49 201.1 286 49.0
BolC4t27860H Brassica oleracea HOM05D007074 ORTHO05D008542 7.4e-49 198.4 284 46.5
AT2G34610 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 6.3e-48 195.3 296 47.6
BraA04t18155Z Brassica rapa HOM05D007074 ORTHO05D008542 1.1e-47 194.5 283 45.2
AL270U10020 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 1.5e-46 190.7 296 51.7
AL4G30590 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 1.5e-46 190.7 296 51.4
Carub.0004s1629 Capsella rubella HOM05D007074 ORTHO05D008542 2.0e-46 190.3 309 46.6
A05p11040 Brassica napus HOM05D007074 ORTHO05D008542 2.6e-46 189.9 284 45.4
BraA05t20049Z Brassica rapa HOM05D007074 ORTHO05D008542 2.6e-46 189.9 284 45.8
BcaB06g28786 Brassica carinata HOM05D007074 ORTHO05D008542 1.7e-45 187.2 282 44.3
BcaB02g09522 Brassica carinata HOM05D007074 ORTHO05D008542 1.4e-44 184.1 277 45.5
Aa31LG10G6790 Aethionema arabicum HOM05D007074 ORTHO05D008542 7.2e-44 181.8 271 46.1
CARHR128710 Cardamine hirsuta HOM05D007074 ORTHO05D008542 2.7e-43 179.9 292 49.0
Sp4g16880 Schrenkiella parvula HOM05D007074 ORTHO05D008542 7.9e-43 178.3 290 42.8
C04p14170 Brassica napus HOM05D007074 ORTHO05D008542 1.0e-42 177.9 285 44.2
BolC4t23006H Brassica oleracea HOM05D007074 ORTHO05D008542 1.0e-42 177.9 285 44.2
BcaC02g11538 Brassica carinata HOM05D007074 ORTHO05D008542 3.0e-42 176.4 285 43.9
Aa31LG6G5540 Aethionema arabicum HOM05D007074 ORTHO05D008542 1.1e-41 174.5 367 37.6
THA.LOC104820655 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 3.3e-41 172.9 289 43.3
BolC7t42036H Brassica oleracea HOM05D007074 ORTHO05D008542 1.3e-32 144.4 206 53.4
BcaC06g35492 Brassica carinata HOM05D007074 ORTHO05D008542 4.8e-32 142.5 206 52.9
Thecc.06G148300 Theobroma cacao HOM05D007074 ORTHO05D008542 7.7e-22 108.6 284 37.0
Ciclev10017572m.g Citrus clementina HOM05D007074 ORTHO05D008542 8.5e-21 105.1 275 36.7
MD10G1260500 Malus domestica HOM05D007074 ORTHO05D008542 8.5e-21 105.1 271 34.3
Gorai.009G154100 Gossypium raimondii HOM05D007074 ORTHO05D008542 1.2e-19 101.3 276 34.8
Gohir.D05G150000 Gossypium hirsutum HOM05D007074 ORTHO05D008542 1.0e-18 98.2 276 34.4
Oeu034132.1 Olea europaea HOM05D007074 ORTHO05D008542 1.0e-18 98.2 271 33.6
Glyma.15G092900 Glycine max HOM05D007074 ORTHO05D008542 1.4e-18 97.8 278 35.6
CiPaw.10G090600 Carya illinoinensis HOM05D007074 ORTHO05D008542 1.8e-18 97.4 262 34.4
QL05p057294 Quercus lobata HOM05D007074 ORTHO05D008542 1.8e-18 97.4 280 32.5
Gohir.A05G147500 Gossypium hirsutum HOM05D007074 ORTHO05D008542 3.0e-18 96.7 286 33.6
Lalb_Chr20g0117821 Lupinus albus HOM05D007074 ORTHO05D008542 5.2e-18 95.9 302 31.8
MD05G1281700 Malus domestica HOM05D007074 ORTHO05D008542 8.8e-18 95.1 264 34.8
Duzib235G1065 Durio zibethinus HOM05D007074 ORTHO05D008542 1.2e-17 94.7 281 33.1
Prupe.4G082900 Prunus persica HOM05D007074 ORTHO05D008542 1.5e-17 94.4 292 34.6
TWI73G0984 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 2.0e-17 94.0 275 32.4
Hma1.2p1_0020F.1_g014170 Hydrangea macrophylla HOM05D007074 ORTHO05D008542 2.6e-17 93.6 245 34.7
Manes.17G071900 Manihot esculenta HOM05D007074 ORTHO05D008542 2.6e-17 93.6 276 33.3
COL.COLO4_31042 Corchorus olitorius HOM05D007074 ORTHO05D008542 4.4e-17 92.8 253 35.6
FAN21G0051 Fragaria x ananassa HOM05D007074 ORTHO05D008542 4.4e-17 92.8 266 36.1
FAN16G0984 Fragaria x ananassa HOM05D007074 ORTHO05D008542 1.3e-16 91.3 264 35.6
FAN25G3808 Fragaria x ananassa HOM05D007074 ORTHO05D008542 1.3e-16 91.3 264 35.2
Cfa000927 Carpinus fangiana HOM05D007074 ORTHO05D008542 1.7e-16 90.9 278 33.5
Phvul.006G166000 Phaseolus vulgaris HOM05D007074 ORTHO05D008542 1.7e-16 90.9 272 34.9
Psat1g191160 Pisum sativum HOM05D007074 ORTHO05D008542 2.8e-16 90.1 279 32.3
Manes.15G123200 Manihot esculenta HOM05D007074 ORTHO05D008542 4.8e-16 89.4 266 30.8
Glyma.13G219300 Glycine max HOM05D007074 ORTHO05D008542 6.3e-16 89.0 275 33.1
TPR.G26250 Trifolium pratense HOM05D007074 ORTHO05D008542 3.1e-15 86.7 293 32.8
Psat1g191080 Pisum sativum HOM05D007074 ORTHO05D008542 4.1e-15 86.3 271 31.4
TWI53G1156 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 7.0e-15 85.5 270 32.6
CiPaw.09G122000 Carya illinoinensis HOM05D007074 ORTHO05D008542 9.1e-15 85.1 272 34.6
Migut.M00897 Erythranthe guttata HOM05D007074 ORTHO05D008542 3.5e-14 83.2 264 33.7
Medtr2g019160 Medicago truncatula HOM05D007074 ORTHO05D008542 3.5e-14 83.2 278 32.0
Nn3g20397 Nelumbo nucifera HOM05D007074 ORTHO05D008542 3.5e-14 83.2 255 34.5
Atru.chr10.1177 Acer truncatum HOM05D007074 ORTHO05D008542 1.7e-13 80.9 274 36.9
Eucgr.E02421 Eucalyptus grandis HOM05D007074 ORTHO05D008542 1.7e-13 80.9 267 31.8
SGA_v2.0_scaffold1478G53958 Striga asiatica HOM05D007074 ORTHO05D008542 8.5e-13 78.6 260 31.9
SGA_v2.0_scaffold1G00191 Striga asiatica HOM05D007074 ORTHO05D008542 8.5e-13 78.6 260 31.9
Sed0013579 Sechium edule HOM05D007074 ORTHO05D008542 5.5e-12 75.9 274 30.3
FvH4_3g05300 Fragaria vesca HOM05D007074 ORTHO05D008542 7.2e-12 75.5 257 33.5
PGR031G2887 Punica granatum HOM05D007074 ORTHO05D008542 7.2e-12 75.5 289 32.5
CsaV3_1G032390 Cucumis sativus L. HOM05D007074 ORTHO05D008542 1.0e-10 71.6 279 29.7
MELO3C002739.2 Cucumis melo HOM05D007074 ORTHO05D008542 3.0e-10 70.1 276 31.5
Lj6g0018330 Lotus japonicus HOM05D007074 ORTHO05D008542 3.0e-10 70.1 267 27.3
PGSC0003DMG400021166 Solanum tuberosum HOM05D007074 ORTHO05D008542 3.0e-10 70.1 250 30.8
C07p15450 Brassica napus HOM05D007074 ORTHO05D008542 4.0e-10 69.7 171 40.9
Dinv05217 Davidia involucrata HOM05D007074 ORTHO05D008542 6.8e-10 68.9 163 32.5
Gohir.A06G138601 Gossypium hirsutum HOM05D007074 ORTHO05D008542 6.8e-10 68.9 245 30.6
VMungo0540G2047 Vigna mungo HOM05D007074 ORTHO05D008542 3.4e-09 66.6 216 34.7
Gohir.D06G143401 Gossypium hirsutum HOM05D007074 ORTHO05D008542 4.4e-09 66.2 241 29.9
vmacro03335 Vaccinium macrocarpon HOM05D001104 ORTHO05D006535 5.7e-09 65.9 248 35.9
Gorai.010G167100 Gossypium raimondii HOM05D007074 ORTHO05D008542 9.8e-09 65.1 239 30.1
CsaV3_1G032290 Cucumis sativus L. HOM05D035155 ORTHO05D008542 1.3e-08 64.7 250 27.2
arahy.Tifrunner.gnm1.ann1.4BL86F Arachis hypogaea HOM05D007074 ORTHO05D008542 1.7e-08 64.3 237 31.6
Glyma.08G097500 Glycine max HOM05D007074 ORTHO05D008542 1.7e-08 64.3 258 28.3
Ca_00533_v3 Cicer arietinum L. HOM05D007074 ORTHO05D008542 4.8e-08 62.8 231 30.7
MBI02_g24299_MAGBIO Magnolia biondii HOM05D007074 ORTHO05D008542 4.8e-08 62.8 285 29.1
Gohir.A10G042100 Gossypium hirsutum HOM05D007074 ORTHO05D008542 2.4e-07 60.5 264 29.9
Potri.004G065300 Populus trichocarpa HOM05D007074 ORTHO05D008542 5.4e-07 59.3 234 30.8
Rhsim13G0115100 Rhododendron simsii HOM05D007074 ORTHO05D008542 9.1e-07 58.5 78 42.3
Gohir.D10G043000 Gossypium hirsutum HOM05D007074 ORTHO05D008542 2.0e-06 57.4 264 29.5
Gorai.011G045600 Gossypium raimondii HOM05D007074 ORTHO05D008542 2.0e-06 57.4 264 28.8
Nn4g26598 Nelumbo nucifera HOM05D007074 ORTHO05D008542 2.0e-06 57.4 255 29.4
CANSAT35G1578 Cannabis sativa HOM05D007074 ORTHO05D008542 3.5e-06 56.6 91 45.1
DCAR_003900 Daucus carota HOM05D007074 ORTHO05D008542 7.7e-06 55.5 241 29.9


User provided reference genes

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