Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 3.9e-154 548.1 281 100.0
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 3.6e-136 488.4 281 90.4
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 6.7e-130 467.6 280 87.5
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.0e-122 443.7 282 85.1
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 7.4e-113 411.0 283 81.3
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 9.0e-111 404.1 283 80.2
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 2.0e-110 402.9 284 79.9
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.3e-106 390.2 309 73.5
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 1.5e-105 386.7 298 74.2
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 5.9e-102 374.8 280 71.4
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 1.4e-100 370.2 258 79.8
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 7.4e-97 357.8 271 75.3
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 4.8e-96 355.1 284 72.5
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.2e-94 350.5 240 78.3
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 3.4e-94 349.0 281 71.9
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 2.5e-92 342.8 284 71.1
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 4.2e-84 315.5 257 62.3
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.6e-83 313.5 281 60.9
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 4.7e-83 312.0 256 60.9
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.2e-81 307.4 257 62.6
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 2.0e-81 306.6 285 58.2
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 3.3e-81 305.8 281 57.7
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 3.3e-81 305.8 268 60.8
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 4.4e-81 305.4 194 77.8
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 7.5e-81 304.7 209 72.7
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 9.7e-81 304.3 284 58.5
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 9.7e-81 304.3 269 60.2
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 9.7e-81 304.3 251 62.2
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.3e-80 303.9 256 62.1
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.3e-80 303.9 285 58.2
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.3e-80 303.9 252 61.5
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 4.8e-80 302.0 278 57.6
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 8.2e-80 301.2 292 58.2
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 8.2e-80 301.2 274 60.2
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.1e-79 300.8 291 58.1
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.1e-79 300.8 276 57.6
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.4e-79 300.4 268 60.4
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 1.4e-79 300.4 187 76.5
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.4e-79 300.4 285 57.2
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.8e-79 300.1 187 75.9
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 2.4e-79 299.7 212 69.8
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 3.1e-79 299.3 189 76.2
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 4.1e-79 298.9 274 60.6
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 4.1e-79 298.9 189 77.8
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 4.1e-79 298.9 290 57.2
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 4.1e-79 298.9 290 57.2
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 5.3e-79 298.5 285 57.5
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 7.0e-79 298.1 238 65.5
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.2e-78 297.4 267 57.3
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 1.6e-78 297.0 243 64.2
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.0e-78 296.6 269 57.2
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.7e-78 296.2 236 65.7
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 4.5e-78 295.4 235 64.7
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 5.9e-78 295.0 194 71.6
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.0e-77 294.3 261 59.0
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 2.2e-77 293.1 257 61.5
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 3.8e-77 292.4 255 59.6
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 6.5e-77 291.6 192 75.0
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 6.5e-77 291.6 297 55.6
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.5e-76 290.4 277 55.6
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 1.5e-76 290.4 257 58.8
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 9.4e-76 287.7 193 70.5
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 9.4e-76 287.7 193 70.5
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 9.4e-76 287.7 191 73.8
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 9.4e-76 287.7 202 71.3
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 9.4e-76 287.7 188 75.0
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.6e-75 287.0 187 72.7
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 1.6e-75 287.0 185 74.6
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 2.1e-75 286.6 195 74.4
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 2.7e-75 286.2 281 53.0
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 6.1e-75 285.0 229 64.2
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 6.1e-75 285.0 205 68.8
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 8.0e-75 284.6 188 73.9
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 8.0e-75 284.6 229 63.3
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.8e-74 283.5 252 59.1
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.8e-74 283.5 295 52.9
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 2.3e-74 283.1 209 69.4
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 4.0e-74 282.3 236 59.7
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 8.8e-74 281.2 195 73.3
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 1.2e-73 280.8 186 73.1
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 2.6e-73 279.6 188 72.9
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 2.6e-73 279.6 276 53.3
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 4.4e-73 278.9 195 66.7
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.3e-72 277.3 242 59.5
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.7e-72 276.9 188 70.7
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 4.8e-72 275.4 194 71.6
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 6.3e-72 275.0 199 70.4
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 8.3e-72 274.6 301 53.2
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 1.1e-71 274.2 188 72.3
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.4e-71 273.9 190 68.4
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 1.8e-71 273.5 188 72.3
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 1.8e-71 273.5 223 65.0
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 9.1e-71 271.2 283 61.5
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 9.1e-71 271.2 246 67.1
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.6e-70 270.4 246 57.7
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.6e-70 270.4 246 57.7
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.0e-70 270.0 246 56.5
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 2.7e-70 269.6 246 56.5
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 4.5e-70 268.9 246 57.3
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 4.5e-70 268.9 193 69.4
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 5.9e-70 268.5 195 72.3
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.3e-69 267.3 174 74.1
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.9e-69 266.2 226 61.1
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 1.1e-68 264.2 192 68.2
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.1e-68 264.2 271 54.6
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 1.2e-67 260.8 283 53.0
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 1.8e-66 256.9 203 66.0
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 2.3e-66 256.5 283 59.7
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 2.0e-65 253.4 194 64.4
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.0e-65 253.4 211 61.1
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 2.6e-65 253.1 186 62.9
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.0e-61 241.1 169 67.5
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 3.8e-61 239.2 189 66.1
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 3.8e-61 239.2 160 69.4
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.1e-60 237.7 185 64.9
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 2.1e-59 233.4 208 57.2
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 5.4e-55 218.8 176 65.3
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 1.6e-54 217.2 177 59.3
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 6.0e-54 215.3 137 76.6
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.1e-52 211.1 221 63.8
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.3e-52 209.5 134 72.4
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 7.3e-52 208.4 197 56.9
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 8.0e-51 204.9 181 60.8
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.9e-44 183.7 109 77.1
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 2.6e-41 173.3 118 69.5
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 5.6e-36 155.6 93 79.6
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.8e-34 150.6 248 39.5
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 7.1e-31 138.7 102 65.7
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.3e-28 129.8 188 44.7
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 1.6e-27 127.5 167 40.1
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 8.1e-27 125.2 135 45.9
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.1e-26 124.8 151 42.4
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 4.0e-26 122.9 133 46.6
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.7e-24 117.5 85 64.7
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.7e-24 117.5 85 64.7
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 5.4e-23 112.5 85 67.1
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.5e-20 104.4 98 54.1
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 7.1e-15 85.5 111 48.6
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.1e-12 78.2 185 36.2
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 2.6e-09 67.0 41 73.2
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 3.2e-07 60.1 52 57.7
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 5.5e-07 59.3 56 62.5


User provided reference genes

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