Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 2.4e-141 505.8 300 100.0
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 1.5e-119 433.3 305 86.9
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 7.0e-85 318.2 312 61.5
Carub.0006s3693 Capsella rubella HOM05D012121 ORTHO05D005694 2.2e-78 296.6 310 63.5
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 2.8e-78 296.2 313 59.7
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 4.7e-73 278.9 312 56.4
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 2.2e-70 270.0 315 56.2
C09p00270 Brassica napus HOM05D012121 ORTHO05D005694 2.4e-69 266.5 318 55.0
BcaC04g24184 Brassica carinata HOM05D012121 ORTHO05D005694 7.7e-68 261.5 318 55.0
BolC9t52962H Brassica oleracea HOM05D012121 ORTHO05D005694 7.7e-68 261.5 318 55.0
BraA09t35701Z Brassica rapa HOM05D012121 ORTHO05D005694 5.0e-67 258.8 318 61.9
A09p00590 Brassica napus HOM05D012121 ORTHO05D005694 1.4e-64 250.8 318 61.0
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 2.0e-47 193.7 314 45.2
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 2.8e-25 120.2 121 60.3
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 6.6e-19 99.0 336 31.5
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 4.3e-18 96.3 222 35.1
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 2.9e-14 83.6 352 28.7
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 3.8e-14 83.2 220 34.5
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 3.8e-14 83.2 211 36.5
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 6.4e-14 82.4 319 29.8
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 1.1e-13 81.6 248 31.9
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 1.9e-13 80.9 319 33.5
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 1.9e-13 80.9 318 31.4
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 4.2e-13 79.7 344 28.8
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.6e-12 77.8 229 32.8
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 1.6e-12 77.8 251 32.3
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 2.1e-12 77.4 339 28.3
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 3.5e-12 76.6 330 30.3
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 4.6e-12 76.3 312 31.7
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 4.6e-12 76.3 321 32.4
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 1.0e-11 75.1 203 32.0
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 1.8e-11 74.3 342 29.2
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 1.8e-11 74.3 323 28.5
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 1.8e-11 74.3 203 35.0
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 2.3e-11 73.9 316 29.7
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 2.3e-11 73.9 317 33.4
Aa31LG5G640 Aethionema arabicum HOM05D012121 ORTHO05D005694 3.9e-11 73.2 166 48.8
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 5.1e-11 72.8 333 29.1
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.1e-11 72.8 324 28.1
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.9e-10 70.9 234 32.9
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 2.5e-10 70.5 338 28.1
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 5.6e-10 69.3 339 26.8
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 5.6e-10 69.3 336 27.1
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 1.6e-09 67.8 355 33.8
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 1.6e-09 67.8 338 28.7
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.6e-09 67.8 234 32.5
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 2.1e-09 67.4 251 29.5
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 2.1e-09 67.4 234 32.5
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.6e-09 66.6 234 32.1
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 4.8e-09 66.2 207 30.9
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.8e-09 66.2 234 32.1
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 4.8e-09 66.2 230 30.4
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.1e-08 65.1 313 27.5
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 2.4e-08 63.9 316 25.9
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 2.4e-08 63.9 320 30.0
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 3.1e-08 63.5 233 30.5
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 4.0e-08 63.2 350 27.1
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 5.3e-08 62.8 321 28.7
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.9e-08 62.4 314 25.8
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 2.0e-07 60.8 236 27.5
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 2.6e-07 60.5 332 35.2
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.6e-07 60.5 317 25.9
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 2.6e-07 60.5 346 27.5
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 2.6e-07 60.5 340 27.4
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 2.6e-07 60.5 326 26.7
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 3.4e-07 60.1 315 26.3
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 4.5e-07 59.7 229 28.8
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 5.8e-07 59.3 316 28.8
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 5.8e-07 59.3 213 32.4
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 1.3e-06 58.2 235 29.8
Oeu035728.1 Olea europaea HOM05D006343 ORTHO05D005694 1.3e-06 58.2 205 27.8
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 1.3e-06 58.2 341 29.0
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 1.7e-06 57.8 244 27.9
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 2.2e-06 57.4 330 30.3
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 2.9e-06 57.0 97 37.1
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 2.9e-06 57.0 323 27.6
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 6.4e-06 55.8 225 29.8
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 8.4e-06 55.5 256 27.0


User provided reference genes

Program Settings