Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 8.7e-34 146.4 72 100.0
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 4.0e-31 137.5 72 94.4
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 1.5e-30 135.6 72 94.4
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 3.8e-29 131.0 72 91.7
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 1.5e-22 109.0 71 76.1
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 1.5e-22 109.0 75 72.0
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 1.3e-21 105.9 69 76.8
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 5.0e-21 104.0 70 72.9
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 6.5e-21 103.6 75 70.7
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 1.9e-20 102.1 58 82.8
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 2.5e-20 101.7 65 76.9
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 4.2e-20 100.9 58 79.3
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 4.2e-20 100.9 74 64.9
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 5.5e-20 100.5 58 81.0
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 5.5e-20 100.5 58 82.8
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 5.5e-20 100.5 65 75.4
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 7.1e-20 100.1 75 65.3
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 7.1e-20 100.1 75 65.3
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 9.3e-20 99.8 71 67.6
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 1.2e-19 99.4 77 64.9
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 1.2e-19 99.4 66 75.8
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 1.2e-19 99.4 66 75.8
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 1.6e-19 99.0 58 81.0
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 2.1e-19 98.6 72 69.4
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 2.7e-19 98.2 55 83.6
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 2.7e-19 98.2 66 74.2
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 2.7e-19 98.2 66 74.2
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 2.7e-19 98.2 60 76.7
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 4.6e-19 97.4 58 77.6
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 4.6e-19 97.4 72 69.4
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 7.9e-19 96.7 60 75.0
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 1.3e-18 95.9 76 63.2
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 2.3e-18 95.1 66 68.2
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 3.0e-18 94.7 58 74.1
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 3.0e-18 94.7 70 68.6
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 3.9e-18 94.4 56 78.6
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 5.1e-18 94.0 61 73.8
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 5.1e-18 94.0 64 71.9
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 6.7e-18 93.6 61 70.5
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 6.7e-18 93.6 65 69.2
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.7e-18 93.6 65 69.2
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.7e-18 93.6 65 69.2
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.7e-18 93.6 65 69.2
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 6.7e-18 93.6 61 73.8
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 8.7e-18 93.2 70 67.1
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 8.7e-18 93.2 65 70.8
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 1.1e-17 92.8 57 73.7
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 1.5e-17 92.4 58 74.1
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-17 92.0 65 67.7
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 2.5e-17 91.7 58 75.9
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 4.3e-17 90.9 60 71.7
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 5.7e-17 90.5 69 63.8
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 5.7e-17 90.5 69 60.9
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 7.4e-17 90.1 71 63.4
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 9.7e-17 89.7 75 58.7
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 9.7e-17 89.7 85 56.5
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 1.3e-16 89.4 58 67.2
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 1.6e-16 89.0 56 73.2
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 1.6e-16 89.0 56 71.4
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 2.2e-16 88.6 58 67.2
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.8e-16 88.2 58 63.8
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 2.8e-16 88.2 58 63.8
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 2.8e-16 88.2 56 69.6
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 3.7e-16 87.8 56 69.6
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 3.7e-16 87.8 73 58.9
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 3.7e-16 87.8 58 65.5
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 4.8e-16 87.4 58 65.5
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 6.3e-16 87.0 56 67.9
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 1.1e-15 86.3 63 66.7
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 1.4e-15 85.9 70 58.6
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.8e-15 85.5 58 65.5
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 6.9e-15 83.6 61 63.9
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 9.0e-15 83.2 65 58.5
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 2.0e-14 82.0 69 55.1
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 2.6e-14 81.6 58 65.5
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 5.9e-14 80.5 58 58.6
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 7.7e-14 80.1 61 65.6
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 1.0e-13 79.7 60 60.0
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 2.2e-13 78.6 58 56.9
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 5.0e-13 77.4 70 55.7
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 8.5e-13 76.6 56 62.5
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.1e-12 76.3 59 55.9
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 1.4e-12 75.9 70 55.7
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.9e-12 75.5 101 44.6
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 7.2e-12 73.6 39 84.6
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 2.1e-11 72.0 43 72.1
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.1e-11 70.5 55 60.0
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 7.9e-11 70.1 95 45.3
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.0e-10 69.7 39 82.1
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 6.7e-10 67.0 53 64.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.1e-09 66.2 45 66.7
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 3.3e-09 64.7 57 54.4
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 2.2e-08 62.0 38 68.4
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.3e-08 60.5 65 49.2
Glyma.07G072000 Glycine max HOM05D007705 ORTHO05D009720 3.4e-06 54.7 37 67.6


User provided reference genes

Program Settings